miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 98103 0.7 0.467672
Target:  5'- cGGGGACggCGCGGgaCGaCCUCGUCGCg- -3'
miRNA:   3'- -CCCCUG--GCGUCaaGC-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 82325 0.7 0.476345
Target:  5'- -aGGGCCGCGGgcCGCCCCGgCGg-- -3'
miRNA:   3'- ccCCUGGCGUCaaGCGGGGCgGCgac -5'
8967 5' -63 NC_002512.2 + 10451 0.69 0.548292
Target:  5'- cGGGGGCgCGgAGgagGCCgCCGCCGCc- -3'
miRNA:   3'- -CCCCUG-GCgUCaagCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 142034 0.69 0.548292
Target:  5'- cGGGGGCCGg----CGaCCCGCCGCg- -3'
miRNA:   3'- -CCCCUGGCgucaaGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 110314 0.69 0.557549
Target:  5'- aGGGGAcccgccgggcucCCGCGGUcCGCCCgGuccCCGCUc -3'
miRNA:   3'- -CCCCU------------GGCGUCAaGCGGGgC---GGCGAc -5'
8967 5' -63 NC_002512.2 + 123101 0.69 0.557549
Target:  5'- cGGGuCCgGCGGaacCGUCCCGCCGCc- -3'
miRNA:   3'- cCCCuGG-CGUCaa-GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 55381 0.68 0.57619
Target:  5'- cGGGaacuGCUGCAGaaccccagCGCCCCGCCgagcgugccGCUGg -3'
miRNA:   3'- cCCC----UGGCGUCaa------GCGGGGCGG---------CGAC- -5'
8967 5' -63 NC_002512.2 + 3256 0.68 0.585564
Target:  5'- -cGGuCCGCGGgcUCgGUCCCGUCGCUGc -3'
miRNA:   3'- ccCCuGGCGUCa-AG-CGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 34890 0.68 0.585564
Target:  5'- cGGGACCGCcg-UCGCCCucuugCGCCGa-- -3'
miRNA:   3'- cCCCUGGCGucaAGCGGG-----GCGGCgac -5'
8967 5' -63 NC_002512.2 + 7458 0.68 0.594966
Target:  5'- gGGGGaaGCCGCGGcgCGgcugccggcCCCCGCCGa-- -3'
miRNA:   3'- -CCCC--UGGCGUCaaGC---------GGGGCGGCgac -5'
8967 5' -63 NC_002512.2 + 6356 0.69 0.539084
Target:  5'- cGGcGGGCCGCGGgcgcgUGCCguucuCCGCCGUg- -3'
miRNA:   3'- -CC-CCUGGCGUCaa---GCGG-----GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 137301 0.69 0.529929
Target:  5'- cGGGACCGC----CGCCCCucccgGCCGCg- -3'
miRNA:   3'- cCCCUGGCGucaaGCGGGG-----CGGCGac -5'
8967 5' -63 NC_002512.2 + 9748 0.7 0.476345
Target:  5'- uGGGGGCgGCGGagcCGgaCCCGCCGCc- -3'
miRNA:   3'- -CCCCUGgCGUCaa-GCg-GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 20242 0.7 0.483341
Target:  5'- aGGGGcacGCCGCAGccgucgucguccUCGUCCgGCCGCa- -3'
miRNA:   3'- -CCCC---UGGCGUCa-----------AGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 2456 0.7 0.485097
Target:  5'- aGGuGACCGCGGccCGCgCCCGCgCGCg- -3'
miRNA:   3'- cCC-CUGGCGUCaaGCG-GGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 124080 0.7 0.485097
Target:  5'- cGGGGGcuucuCCGCcGUcuUCGCCCuCGCCGUc- -3'
miRNA:   3'- -CCCCU-----GGCGuCA--AGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 56255 0.7 0.502826
Target:  5'- -cGGAcCCGgGGUUCGCCgCCGCgGCg- -3'
miRNA:   3'- ccCCU-GGCgUCAAGCGG-GGCGgCGac -5'
8967 5' -63 NC_002512.2 + 67955 0.7 0.510896
Target:  5'- aGGGGuCgCGcCGGUUCGCCguggcguCCGCCGgaGg -3'
miRNA:   3'- -CCCCuG-GC-GUCAAGCGG-------GGCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 47696 0.69 0.520832
Target:  5'- cGGGGG-CGguGUUCGCCauccugcgCGCCGCc- -3'
miRNA:   3'- -CCCCUgGCguCAAGCGGg-------GCGGCGac -5'
8967 5' -63 NC_002512.2 + 118767 0.69 0.529929
Target:  5'- -aGGAccCCGCGGgcggCGCCuCCGCCGCc- -3'
miRNA:   3'- ccCCU--GGCGUCaa--GCGG-GGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.