miRNA display CGI


Results 101 - 120 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 209650 0.67 0.661108
Target:  5'- --cGGCUGCGGcgUGCCCCugucgaugauGCCGCUGg -3'
miRNA:   3'- cccCUGGCGUCaaGCGGGG----------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 204665 0.67 0.657334
Target:  5'- gGGGGAUCGCcGgcggcucgcuccCGCUCCGUCGCg- -3'
miRNA:   3'- -CCCCUGGCGuCaa----------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 219388 0.67 0.651667
Target:  5'- uGGGcugccuCCGCuGgUCGgCCCGCCGCg- -3'
miRNA:   3'- cCCCu-----GGCGuCaAGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 206891 0.67 0.651667
Target:  5'- cGGGuaggucaccagcGCCGCccg-CGUCCCGCCGCg- -3'
miRNA:   3'- cCCC------------UGGCGucaaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 152730 0.67 0.651667
Target:  5'- aGGGGACaCGCAGaggCGUUCCgGCCGg-- -3'
miRNA:   3'- -CCCCUG-GCGUCaa-GCGGGG-CGGCgac -5'
8967 5' -63 NC_002512.2 + 174336 0.66 0.707876
Target:  5'- cGGGGGuCCGCcg--CGCCCuCGuCCGCc- -3'
miRNA:   3'- -CCCCU-GGCGucaaGCGGG-GC-GGCGac -5'
8967 5' -63 NC_002512.2 + 126457 0.66 0.707876
Target:  5'- cGGcGGCCGCcuuGUUCGCCgucgUCGUCGCg- -3'
miRNA:   3'- cCC-CUGGCGu--CAAGCGG----GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 192880 0.66 0.744343
Target:  5'- cGGGGACgcauauaagCGCcGUcgCGCUCCGCgGCg- -3'
miRNA:   3'- -CCCCUG---------GCGuCAa-GCGGGGCGgCGac -5'
8967 5' -63 NC_002512.2 + 183515 0.66 0.744343
Target:  5'- gGGGaGGCCGUcc-UCGCCUgGCUGCg- -3'
miRNA:   3'- -CCC-CUGGCGucaAGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 142620 0.66 0.744343
Target:  5'- --cGACCGCGuGUUCGCUCC-CCGgaGa -3'
miRNA:   3'- cccCUGGCGU-CAAGCGGGGcGGCgaC- -5'
8967 5' -63 NC_002512.2 + 106305 0.66 0.744343
Target:  5'- --cGACCGCGGgcccgUCGUccagCCCGUCGCUc -3'
miRNA:   3'- cccCUGGCGUCa----AGCG----GGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 77535 0.66 0.744343
Target:  5'- cGGGACCGgAGa-CGCCUaCGUCGCg- -3'
miRNA:   3'- cCCCUGGCgUCaaGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 75293 0.66 0.743446
Target:  5'- cGGcGGcgacgauGCCGCcg-UCGCCCuCGCCGUUa -3'
miRNA:   3'- -CC-CC-------UGGCGucaAGCGGG-GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 217942 0.66 0.741649
Target:  5'- uGGGGACCgggGCGGggaacgacugccuaUUUGCCgagCGCCGCUu -3'
miRNA:   3'- -CCCCUGG---CGUC--------------AAGCGGg--GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 171906 0.66 0.726248
Target:  5'- cGGGACuCGgugauaGGUUCGUcgcccucuucgCCCGCCGCg- -3'
miRNA:   3'- cCCCUG-GCg-----UCAAGCG-----------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 155379 0.66 0.726248
Target:  5'- cGGGACCGCgaggcuggcgaGGUccucucCGUCCUGUCGCUc -3'
miRNA:   3'- cCCCUGGCG-----------UCAa-----GCGGGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 92520 0.66 0.726248
Target:  5'- cGGGaGACCGCgcGGaUCuaCCCGgCCGCg- -3'
miRNA:   3'- -CCC-CUGGCG--UCaAGcgGGGC-GGCGac -5'
8967 5' -63 NC_002512.2 + 164261 0.66 0.717093
Target:  5'- cGGGGGCCGUcgGGUcgaUCGCCUCGg-GCUu -3'
miRNA:   3'- -CCCCUGGCG--UCA---AGCGGGGCggCGAc -5'
8967 5' -63 NC_002512.2 + 229696 0.66 0.717093
Target:  5'- gGGGGGCCaggGCAGcccaCGCCCUccggccuccucuGCCGCc- -3'
miRNA:   3'- -CCCCUGG---CGUCaa--GCGGGG------------CGGCGac -5'
8967 5' -63 NC_002512.2 + 293 0.66 0.717093
Target:  5'- gGGGGGCCaggGCAGcccaCGCCCUccggccuccucuGCCGCc- -3'
miRNA:   3'- -CCCCUGG---CGUCaa--GCGGGG------------CGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.