miRNA display CGI


Results 121 - 140 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 217942 0.66 0.741649
Target:  5'- uGGGGACCgggGCGGggaacgacugccuaUUUGCCgagCGCCGCUu -3'
miRNA:   3'- -CCCCUGG---CGUC--------------AAGCGGg--GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 75293 0.66 0.743446
Target:  5'- cGGcGGcgacgauGCCGCcg-UCGCCCuCGCCGUUa -3'
miRNA:   3'- -CC-CC-------UGGCGucaAGCGGG-GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 77535 0.66 0.744343
Target:  5'- cGGGACCGgAGa-CGCCUaCGUCGCg- -3'
miRNA:   3'- cCCCUGGCgUCaaGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 106305 0.66 0.744343
Target:  5'- --cGACCGCGGgcccgUCGUccagCCCGUCGCUc -3'
miRNA:   3'- cccCUGGCGUCa----AGCG----GGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 142620 0.66 0.744343
Target:  5'- --cGACCGCGuGUUCGCUCC-CCGgaGa -3'
miRNA:   3'- cccCUGGCGU-CAAGCGGGGcGGCgaC- -5'
8967 5' -63 NC_002512.2 + 183515 0.66 0.744343
Target:  5'- gGGGaGGCCGUcc-UCGCCUgGCUGCg- -3'
miRNA:   3'- -CCC-CUGGCGucaAGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 192880 0.66 0.744343
Target:  5'- cGGGGACgcauauaagCGCcGUcgCGCUCCGCgGCg- -3'
miRNA:   3'- -CCCCUG---------GCGuCAa-GCGGGGCGgCGac -5'
8967 5' -63 NC_002512.2 + 164261 0.66 0.717093
Target:  5'- cGGGGGCCGUcgGGUcgaUCGCCUCGg-GCUu -3'
miRNA:   3'- -CCCCUGGCG--UCA---AGCGGGGCggCGAc -5'
8967 5' -63 NC_002512.2 + 229696 0.66 0.717093
Target:  5'- gGGGGGCCaggGCAGcccaCGCCCUccggccuccucuGCCGCc- -3'
miRNA:   3'- -CCCCUGG---CGUCaa--GCGGGG------------CGGCGac -5'
8967 5' -63 NC_002512.2 + 293 0.66 0.717093
Target:  5'- gGGGGGCCaggGCAGcccaCGCCCUccggccuccucuGCCGCc- -3'
miRNA:   3'- -CCCCUGG---CGUCaa--GCGGGG------------CGGCGac -5'
8967 5' -63 NC_002512.2 + 149178 0.67 0.670529
Target:  5'- cGGGcCCGCGcgcccUCGCCCCccggacGCCGCUc -3'
miRNA:   3'- cCCCuGGCGUca---AGCGGGG------CGGCGAc -5'
8967 5' -63 NC_002512.2 + 96893 0.67 0.679923
Target:  5'- cGGGGGCCG-GGUUC-CCCUGCUaCUa -3'
miRNA:   3'- -CCCCUGGCgUCAAGcGGGGCGGcGAc -5'
8967 5' -63 NC_002512.2 + 107223 0.67 0.679923
Target:  5'- cGGGGAgCCGCGGUcaccgUCGUCCgGCucgaaaCGCa- -3'
miRNA:   3'- -CCCCU-GGCGUCA-----AGCGGGgCG------GCGac -5'
8967 5' -63 NC_002512.2 + 133879 0.66 0.689283
Target:  5'- cGGGGcguuccGCCugGCGGUcgcggCGCCggacgccgaCCGCCGCUGc -3'
miRNA:   3'- -CCCC------UGG--CGUCAa----GCGG---------GGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 155427 0.66 0.689283
Target:  5'- cGGGAgugccCCGUcGUcgUGuCCCCGCUGCUGa -3'
miRNA:   3'- cCCCU-----GGCGuCAa-GC-GGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 222232 0.66 0.689283
Target:  5'- cGGGGCCGCGuccUUCGUCgCCGUgGCg- -3'
miRNA:   3'- cCCCUGGCGUc--AAGCGG-GGCGgCGac -5'
8967 5' -63 NC_002512.2 + 120874 0.66 0.698603
Target:  5'- cGGGuCCGCAGgacgaCGCCgCCGgCGCc- -3'
miRNA:   3'- cCCCuGGCGUCaa---GCGG-GGCgGCGac -5'
8967 5' -63 NC_002512.2 + 100498 0.66 0.707876
Target:  5'- gGGGaGGCCGCGGUcgUCGagcaCCCGCaCGa-- -3'
miRNA:   3'- -CCC-CUGGCGUCA--AGCg---GGGCG-GCgac -5'
8967 5' -63 NC_002512.2 + 174336 0.66 0.707876
Target:  5'- cGGGGGuCCGCcg--CGCCCuCGuCCGCc- -3'
miRNA:   3'- -CCCCU-GGCGucaaGCGGG-GC-GGCGac -5'
8967 5' -63 NC_002512.2 + 126457 0.66 0.707876
Target:  5'- cGGcGGCCGCcuuGUUCGCCgucgUCGUCGCg- -3'
miRNA:   3'- cCC-CUGGCGu--CAAGCGG----GGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.