miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 224979 0.67 0.642213
Target:  5'- uGGGcGGCgGCGGcggCGCCCucuucccguCGCCGCUc -3'
miRNA:   3'- -CCC-CUGgCGUCaa-GCGGG---------GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 120874 0.66 0.698603
Target:  5'- cGGGuCCGCAGgacgaCGCCgCCGgCGCc- -3'
miRNA:   3'- cCCCuGGCGUCaa---GCGG-GGCgGCGac -5'
8967 5' -63 NC_002512.2 + 183515 0.66 0.744343
Target:  5'- gGGGaGGCCGUcc-UCGCCUgGCUGCg- -3'
miRNA:   3'- -CCC-CUGGCGucaAGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 195771 0.67 0.645996
Target:  5'- uGGGGACCaacgugagccuggacGUGGgcgugUUGCUCCGCUGCg- -3'
miRNA:   3'- -CCCCUGG---------------CGUCa----AGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 192880 0.66 0.744343
Target:  5'- cGGGGACgcauauaagCGCcGUcgCGCUCCGCgGCg- -3'
miRNA:   3'- -CCCCUG---------GCGuCAa-GCGGGGCGgCGac -5'
8967 5' -63 NC_002512.2 + 213049 0.69 0.539084
Target:  5'- gGGGGAUCG-AGaUCGCCCUGCCcaGCc- -3'
miRNA:   3'- -CCCCUGGCgUCaAGCGGGGCGG--CGac -5'
8967 5' -63 NC_002512.2 + 106305 0.66 0.744343
Target:  5'- --cGACCGCGGgcccgUCGUccagCCCGUCGCUc -3'
miRNA:   3'- cccCUGGCGUCa----AGCG----GGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 206700 0.69 0.557549
Target:  5'- aGGGcGACCGUcg-UCGCCCCGguCCGUUu -3'
miRNA:   3'- -CCC-CUGGCGucaAGCGGGGC--GGCGAc -5'
8967 5' -63 NC_002512.2 + 109047 0.69 0.56685
Target:  5'- gGGGGGCuCGgGGgaCGaccggaCCCGCCGCg- -3'
miRNA:   3'- -CCCCUG-GCgUCaaGCg-----GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 134569 0.68 0.57619
Target:  5'- cGGGGACU-----UCG-CCCGCCGCUGc -3'
miRNA:   3'- -CCCCUGGcgucaAGCgGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 227189 0.68 0.594966
Target:  5'- gGGGGAgCgGCAGg-CGCuCCCGCgCGCg- -3'
miRNA:   3'- -CCCCU-GgCGUCaaGCG-GGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 112977 0.68 0.627075
Target:  5'- cGGGGAcgccguccgaggagcCCGCcccg-GCCCCGCCGCc- -3'
miRNA:   3'- -CCCCU---------------GGCGucaagCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 205032 0.67 0.632753
Target:  5'- cGGGGCCGC-GUcCGCCgCCgaccgGCCGCg- -3'
miRNA:   3'- cCCCUGGCGuCAaGCGG-GG-----CGGCGac -5'
8967 5' -63 NC_002512.2 + 152730 0.67 0.651667
Target:  5'- aGGGGACaCGCAGaggCGUUCCgGCCGg-- -3'
miRNA:   3'- -CCCCUG-GCGUCaa-GCGGGG-CGGCgac -5'
8967 5' -63 NC_002512.2 + 204665 0.67 0.657334
Target:  5'- gGGGGAUCGCcGgcggcucgcuccCGCUCCGUCGCg- -3'
miRNA:   3'- -CCCCUGGCGuCaa----------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 96893 0.67 0.679923
Target:  5'- cGGGGGCCG-GGUUC-CCCUGCUaCUa -3'
miRNA:   3'- -CCCCUGGCgUCAAGcGGGGCGGcGAc -5'
8967 5' -63 NC_002512.2 + 155427 0.66 0.689283
Target:  5'- cGGGAgugccCCGUcGUcgUGuCCCCGCUGCUGa -3'
miRNA:   3'- cCCCU-----GGCGuCAa-GC-GGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 126457 0.66 0.707876
Target:  5'- cGGcGGCCGCcuuGUUCGCCgucgUCGUCGCg- -3'
miRNA:   3'- cCC-CUGGCGu--CAAGCGG----GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 164261 0.66 0.717093
Target:  5'- cGGGGGCCGUcgGGUcgaUCGCCUCGg-GCUu -3'
miRNA:   3'- -CCCCUGGCG--UCA---AGCGGGGCggCGAc -5'
8967 5' -63 NC_002512.2 + 217942 0.66 0.741649
Target:  5'- uGGGGACCgggGCGGggaacgacugccuaUUUGCCgagCGCCGCUu -3'
miRNA:   3'- -CCCCUGG---CGUC--------------AAGCGGg--GCGGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.