miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 205032 0.67 0.632753
Target:  5'- cGGGGCCGC-GUcCGCCgCCgaccgGCCGCg- -3'
miRNA:   3'- cCCCUGGCGuCAaGCGG-GG-----CGGCGac -5'
8967 5' -63 NC_002512.2 + 224715 0.68 0.604392
Target:  5'- uGGGGccgGCCGC----CGCCCCggucgcGCCGCUGc -3'
miRNA:   3'- -CCCC---UGGCGucaaGCGGGG------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 77535 0.66 0.744343
Target:  5'- cGGGACCGgAGa-CGCCUaCGUCGCg- -3'
miRNA:   3'- cCCCUGGCgUCaaGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 171906 0.66 0.726248
Target:  5'- cGGGACuCGgugauaGGUUCGUcgcccucuucgCCCGCCGCg- -3'
miRNA:   3'- cCCCUG-GCg-----UCAAGCG-----------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 229696 0.66 0.717093
Target:  5'- gGGGGGCCaggGCAGcccaCGCCCUccggccuccucuGCCGCc- -3'
miRNA:   3'- -CCCCUGG---CGUCaa--GCGGGG------------CGGCGac -5'
8967 5' -63 NC_002512.2 + 174336 0.66 0.707876
Target:  5'- cGGGGGuCCGCcg--CGCCCuCGuCCGCc- -3'
miRNA:   3'- -CCCCU-GGCGucaaGCGGG-GC-GGCGac -5'
8967 5' -63 NC_002512.2 + 133879 0.66 0.689283
Target:  5'- cGGGGcguuccGCCugGCGGUcgcggCGCCggacgccgaCCGCCGCUGc -3'
miRNA:   3'- -CCCC------UGG--CGUCAa----GCGG---------GGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 149178 0.67 0.670529
Target:  5'- cGGGcCCGCGcgcccUCGCCCCccggacGCCGCUc -3'
miRNA:   3'- cCCCuGGCGUca---AGCGGGG------CGGCGAc -5'
8967 5' -63 NC_002512.2 + 219388 0.67 0.651667
Target:  5'- uGGGcugccuCCGCuGgUCGgCCCGCCGCg- -3'
miRNA:   3'- cCCCu-----GGCGuCaAGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 149632 0.67 0.651667
Target:  5'- gGGaGGACCGCAcGga-GCCCgGcCCGCa- -3'
miRNA:   3'- -CC-CCUGGCGU-CaagCGGGgC-GGCGac -5'
8967 5' -63 NC_002512.2 + 150070 0.73 0.334476
Target:  5'- gGGGGACCGC----CGCCgCCGCCGUc- -3'
miRNA:   3'- -CCCCUGGCGucaaGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 94671 0.72 0.370646
Target:  5'- cGGGGCCGgGGggCcCCCCGgcCCGCUGg -3'
miRNA:   3'- cCCCUGGCgUCaaGcGGGGC--GGCGAC- -5'
8967 5' -63 NC_002512.2 + 207530 0.68 0.57619
Target:  5'- cGGGGCCGCG--UCcUCCCGCUGCg- -3'
miRNA:   3'- cCCCUGGCGUcaAGcGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 123643 0.68 0.575254
Target:  5'- cGGGGagagcgcGCCGCGGUUC-CCgCGCgCGCg- -3'
miRNA:   3'- -CCCC-------UGGCGUCAAGcGGgGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 206700 0.69 0.557549
Target:  5'- aGGGcGACCGUcg-UCGCCCCGguCCGUUu -3'
miRNA:   3'- -CCC-CUGGCGucaAGCGGGGC--GGCGAc -5'
8967 5' -63 NC_002512.2 + 213049 0.69 0.539084
Target:  5'- gGGGGAUCG-AGaUCGCCCUGCCcaGCc- -3'
miRNA:   3'- -CCCCUGGCgUCaAGCGGGGCGG--CGac -5'
8967 5' -63 NC_002512.2 + 150682 0.69 0.520832
Target:  5'- cGGGcGCgGCGG-UCGCCCCGacggaCCGUUGg -3'
miRNA:   3'- -CCCcUGgCGUCaAGCGGGGC-----GGCGAC- -5'
8967 5' -63 NC_002512.2 + 124321 0.7 0.485097
Target:  5'- cGGGGCCGCGGcggaCGUgCUGCgGCUGu -3'
miRNA:   3'- cCCCUGGCGUCaa--GCGgGGCGgCGAC- -5'
8967 5' -63 NC_002512.2 + 193002 0.7 0.459081
Target:  5'- -uGGACCGCGGgcgcCGCCCUGCCcacCUGc -3'
miRNA:   3'- ccCCUGGCGUCaa--GCGGGGCGGc--GAC- -5'
8967 5' -63 NC_002512.2 + 220132 0.71 0.433826
Target:  5'- cGGGGCgGCGGgUCcgGCUCCGCCGCc- -3'
miRNA:   3'- cCCCUGgCGUCaAG--CGGGGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.