miRNA display CGI


Results 101 - 120 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 121772 0.67 0.679923
Target:  5'- cGGGACCGCGGacCGCCgaggcggggaCGCCGaaGa -3'
miRNA:   3'- cCCCUGGCGUCaaGCGGg---------GCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 70895 0.76 0.211209
Target:  5'- cGGGGCCGCcgccucCGCCCCGCCGUg- -3'
miRNA:   3'- cCCCUGGCGucaa--GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 50566 0.67 0.679923
Target:  5'- cGGcGCUGCAGgaucugccCGCCUCGCCGCc- -3'
miRNA:   3'- cCCcUGGCGUCaa------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 129880 0.67 0.632753
Target:  5'- gGGGGAuUCGCcg-UCGCCCuCGCCGaCg- -3'
miRNA:   3'- -CCCCU-GGCGucaAGCGGG-GCGGC-Gac -5'
8967 5' -63 NC_002512.2 + 116737 0.67 0.632753
Target:  5'- --cGGCCGCGGcgaggccggCGCCCCGCgCGCg- -3'
miRNA:   3'- cccCUGGCGUCaa-------GCGGGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 102886 0.66 0.689283
Target:  5'- gGGGGACC-CGGguaCGaCCCG-CGCUGg -3'
miRNA:   3'- -CCCCUGGcGUCaa-GCgGGGCgGCGAC- -5'
8967 5' -63 NC_002512.2 + 45711 0.68 0.623291
Target:  5'- cGGGGuaguugaagaCGCAGaaacUCuCCCCGCUGCUGu -3'
miRNA:   3'- -CCCCug--------GCGUCa---AGcGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 6356 0.69 0.539084
Target:  5'- cGGcGGGCCGCGGgcgcgUGCCguucuCCGCCGUg- -3'
miRNA:   3'- -CC-CCUGGCGUCaa---GCGG-----GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 137301 0.69 0.529929
Target:  5'- cGGGACCGC----CGCCCCucccgGCCGCg- -3'
miRNA:   3'- cCCCUGGCGucaaGCGGGG-----CGGCGac -5'
8967 5' -63 NC_002512.2 + 118767 0.69 0.529929
Target:  5'- -aGGAccCCGCGGgcggCGCCuCCGCCGCc- -3'
miRNA:   3'- ccCCU--GGCGUCaa--GCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 47696 0.69 0.520832
Target:  5'- cGGGGG-CGguGUUCGCCauccugcgCGCCGCc- -3'
miRNA:   3'- -CCCCUgGCguCAAGCGGg-------GCGGCGac -5'
8967 5' -63 NC_002512.2 + 67955 0.7 0.510896
Target:  5'- aGGGGuCgCGcCGGUUCGCCguggcguCCGCCGgaGg -3'
miRNA:   3'- -CCCCuG-GC-GUCAAGCGG-------GGCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 56255 0.7 0.502826
Target:  5'- -cGGAcCCGgGGUUCGCCgCCGCgGCg- -3'
miRNA:   3'- ccCCU-GGCgUCAAGCGG-GGCGgCGac -5'
8967 5' -63 NC_002512.2 + 124080 0.7 0.485097
Target:  5'- cGGGGGcuucuCCGCcGUcuUCGCCCuCGCCGUc- -3'
miRNA:   3'- -CCCCU-----GGCGuCA--AGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 2456 0.7 0.485097
Target:  5'- aGGuGACCGCGGccCGCgCCCGCgCGCg- -3'
miRNA:   3'- cCC-CUGGCGUCaaGCG-GGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 13380 0.68 0.623291
Target:  5'- uGGuGCCGCGGUUCGUCCgcuaccugacgCGCUGCg- -3'
miRNA:   3'- cCCcUGGCGUCAAGCGGG-----------GCGGCGac -5'
8967 5' -63 NC_002512.2 + 19190 0.68 0.623291
Target:  5'- cGGGuGAucucCCGCGG--CGCCuuGCCGUUGc -3'
miRNA:   3'- -CCC-CU----GGCGUCaaGCGGggCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 111834 0.68 0.623291
Target:  5'- cGGGGuCCGguGgucguagagCGCCgCCGUCGCc- -3'
miRNA:   3'- -CCCCuGGCguCaa-------GCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 76990 0.67 0.629914
Target:  5'- cGGGGACCGCucccGUUcaccgaccggggacCGCuCCCGCacaccgGCUGc -3'
miRNA:   3'- -CCCCUGGCGu---CAA--------------GCG-GGGCGg-----CGAC- -5'
8967 5' -63 NC_002512.2 + 133646 0.67 0.632753
Target:  5'- uGGcGGAguCCGgGGcggUCGCCgCCGCCGCc- -3'
miRNA:   3'- -CC-CCU--GGCgUCa--AGCGG-GGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.