miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 223108 0.71 0.857369
Target:  5'- --aCgGGGAgGGgGAUCCGCgGGUCGa -3'
miRNA:   3'- gaaGgUCUUgUCgCUAGGCGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 113720 0.68 0.955128
Target:  5'- -gUCCcgacgcGGGCGGCGAUCUGCgGGcCGa -3'
miRNA:   3'- gaAGGu-----CUUGUCGCUAGGCGaCCaGC- -5'
8968 5' -53.8 NC_002512.2 + 92588 0.68 0.965612
Target:  5'- --gCCGGGagggGCGGCGGUCCcgagGCcGGUCGc -3'
miRNA:   3'- gaaGGUCU----UGUCGCUAGG----CGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 39982 0.72 0.832839
Target:  5'- gUUCCAGcGACAGCGAucuugggUCCGacucgGGUCGu -3'
miRNA:   3'- gAAGGUC-UUGUCGCU-------AGGCga---CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 194030 0.67 0.976732
Target:  5'- --aCCGGGAguCGGCGAUCCaggccgccugGCUGGUg- -3'
miRNA:   3'- gaaGGUCUU--GUCGCUAGG----------CGACCAgc -5'
8968 5' -53.8 NC_002512.2 + 219385 0.69 0.928143
Target:  5'- --cCCuGGGCuGCc-UCCGCUGGUCGg -3'
miRNA:   3'- gaaGGuCUUGuCGcuAGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 190224 0.68 0.951198
Target:  5'- -gUCCGGGACGGCcacGUCUGCUGcgacGUCa -3'
miRNA:   3'- gaAGGUCUUGUCGc--UAGGCGAC----CAGc -5'
8968 5' -53.8 NC_002512.2 + 194158 0.67 0.976732
Target:  5'- -aUCCuGAuCuGCGA-CCGCUGGUaCGa -3'
miRNA:   3'- gaAGGuCUuGuCGCUaGGCGACCA-GC- -5'
8968 5' -53.8 NC_002512.2 + 184023 0.71 0.857369
Target:  5'- gUUCUAcgucGACcuCGGUCCGCUGGUCGa -3'
miRNA:   3'- gAAGGUc---UUGucGCUAGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 127482 0.71 0.879302
Target:  5'- -gUCCGGAcGCGGCGAcgUCgGCUGGaaccUCGg -3'
miRNA:   3'- gaAGGUCU-UGUCGCU--AGgCGACC----AGC- -5'
8968 5' -53.8 NC_002512.2 + 145685 0.68 0.96233
Target:  5'- -gUCCGcGGACgAGUGGcugcgCCGCUGGUCc -3'
miRNA:   3'- gaAGGU-CUUG-UCGCUa----GGCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 225399 0.68 0.965612
Target:  5'- uCUUCgGGGACGGCG--CCGg-GGUCGg -3'
miRNA:   3'- -GAAGgUCUUGUCGCuaGGCgaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 184674 0.66 0.982765
Target:  5'- -aUCCGGucgGCGGCcGUCCGCgccgccggucccGGUCGa -3'
miRNA:   3'- gaAGGUCu--UGUCGcUAGGCGa-----------CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 215124 0.68 0.958837
Target:  5'- --gCCAGAACGGCcggGGUCCGCgcgacggGGgaggCGa -3'
miRNA:   3'- gaaGGUCUUGUCG---CUAGGCGa------CCa---GC- -5'
8968 5' -53.8 NC_002512.2 + 117316 0.69 0.938055
Target:  5'- --aCCGGAcggACGGCGGguucCCGCUGG-CGc -3'
miRNA:   3'- gaaGGUCU---UGUCGCUa---GGCGACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 156181 0.69 0.922839
Target:  5'- ----gGGAGCguGGCGAUCC-CUGGUCGu -3'
miRNA:   3'- gaaggUCUUG--UCGCUAGGcGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 85528 0.69 0.922296
Target:  5'- ---aCAGGACGGCGGUCaugacggCGCUGG-CGg -3'
miRNA:   3'- gaagGUCUUGUCGCUAG-------GCGACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 74198 0.66 0.984954
Target:  5'- ---aCAGGGCGGCGAcgUCCGUgGGcUCGc -3'
miRNA:   3'- gaagGUCUUGUCGCU--AGGCGaCC-AGC- -5'
8968 5' -53.8 NC_002512.2 + 15682 0.66 0.984954
Target:  5'- --cCCGGGGCAGCGGg-CGCagcgGGUCc -3'
miRNA:   3'- gaaGGUCUUGUCGCUagGCGa---CCAGc -5'
8968 5' -53.8 NC_002512.2 + 91301 0.66 0.983145
Target:  5'- -cUCCccGGCcGCGAUCCGCagcgUGGUCu -3'
miRNA:   3'- gaAGGucUUGuCGCUAGGCG----ACCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.