miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 134573 0.71 0.849655
Target:  5'- gUUCCGGuACGGCGGcCCGC-GGUCc -3'
miRNA:   3'- gAAGGUCuUGUCGCUaGGCGaCCAGc -5'
8968 5' -53.8 NC_002512.2 + 135354 0.66 0.983145
Target:  5'- --gCUGGAACGGCGGUCCccCUGcGUCu -3'
miRNA:   3'- gaaGGUCUUGUCGCUAGGc-GAC-CAGc -5'
8968 5' -53.8 NC_002512.2 + 143760 0.68 0.96233
Target:  5'- gCUUCCAGGuCcGCGAccuccUCCGCgcccgGGUCc -3'
miRNA:   3'- -GAAGGUCUuGuCGCU-----AGGCGa----CCAGc -5'
8968 5' -53.8 NC_002512.2 + 145685 0.68 0.96233
Target:  5'- -gUCCGcGGACgAGUGGcugcgCCGCUGGUCc -3'
miRNA:   3'- gaAGGU-CUUG-UCGCUa----GGCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 151876 0.66 0.988123
Target:  5'- -cUCguGGGCgccGGCGAUCCGC-GGaUCGu -3'
miRNA:   3'- gaAGguCUUG---UCGCUAGGCGaCC-AGC- -5'
8968 5' -53.8 NC_002512.2 + 152286 0.71 0.879302
Target:  5'- gUUCCG--GCGGCGAUCCGCgagGGaccgcUCGg -3'
miRNA:   3'- gAAGGUcuUGUCGCUAGGCGa--CC-----AGC- -5'
8968 5' -53.8 NC_002512.2 + 153347 0.71 0.879302
Target:  5'- -gUCCGGGuCGGCGGgucCCGCUGGgcugggCGg -3'
miRNA:   3'- gaAGGUCUuGUCGCUa--GGCGACCa-----GC- -5'
8968 5' -53.8 NC_002512.2 + 156181 0.69 0.922839
Target:  5'- ----gGGAGCguGGCGAUCC-CUGGUCGu -3'
miRNA:   3'- gaaggUCUUG--UCGCUAGGcGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 158991 0.72 0.808347
Target:  5'- gCUUCCAGAA-GGUuuguUCCGUUGGUCGa -3'
miRNA:   3'- -GAAGGUCUUgUCGcu--AGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 161846 0.71 0.886192
Target:  5'- gCUUCCGGAcacggcguCGGCGGUCCuCccgGGUCGg -3'
miRNA:   3'- -GAAGGUCUu-------GUCGCUAGGcGa--CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 166476 0.71 0.857369
Target:  5'- --gCgGGGACGGCGGgaCCGCgGGUCGg -3'
miRNA:   3'- gaaGgUCUUGUCGCUa-GGCGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 168588 0.66 0.983145
Target:  5'- -aUCUGGAACAGCug-CgGUUGGUUGg -3'
miRNA:   3'- gaAGGUCUUGUCGcuaGgCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 184023 0.71 0.857369
Target:  5'- gUUCUAcgucGACcuCGGUCCGCUGGUCGa -3'
miRNA:   3'- gAAGGUc---UUGucGCUAGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 184674 0.66 0.982765
Target:  5'- -aUCCGGucgGCGGCcGUCCGCgccgccggucccGGUCGa -3'
miRNA:   3'- gaAGGUCu--UGUCGcUAGGCGa-----------CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 190224 0.68 0.951198
Target:  5'- -gUCCGGGACGGCcacGUCUGCUGcgacGUCa -3'
miRNA:   3'- gaAGGUCUUGUCGc--UAGGCGAC----CAGc -5'
8968 5' -53.8 NC_002512.2 + 191653 0.66 0.983145
Target:  5'- --gCCAGGACGGCGGagacgUCCGCgucccgGGgcugggCGa -3'
miRNA:   3'- gaaGGUCUUGUCGCU-----AGGCGa-----CCa-----GC- -5'
8968 5' -53.8 NC_002512.2 + 194030 0.67 0.976732
Target:  5'- --aCCGGGAguCGGCGAUCCaggccgccugGCUGGUg- -3'
miRNA:   3'- gaaGGUCUU--GUCGCUAGG----------CGACCAgc -5'
8968 5' -53.8 NC_002512.2 + 194158 0.67 0.976732
Target:  5'- -aUCCuGAuCuGCGA-CCGCUGGUaCGa -3'
miRNA:   3'- gaAGGuCUuGuCGCUaGGCGACCA-GC- -5'
8968 5' -53.8 NC_002512.2 + 196143 0.67 0.979042
Target:  5'- aCUUCCAGGGCcGCuccUCGCUccGGUCGa -3'
miRNA:   3'- -GAAGGUCUUGuCGcuaGGCGA--CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 204300 1.09 0.007222
Target:  5'- aCUUCCAGAACAGCGAUCCGCUGGUCGu -3'
miRNA:   3'- -GAAGGUCUUGUCGCUAGGCGACCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.