miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
897 3' -51.6 NC_000899.1 + 4074 0.66 0.864957
Target:  5'- gAUCCGGaUCGAAaaggGCCaagGCCGAC-ACGAc -3'
miRNA:   3'- -UAGGUCaAGCUU----UGG---CGGUUGcUGCU- -5'
897 3' -51.6 NC_000899.1 + 18097 0.66 0.856403
Target:  5'- --gCAGcgUC--AACCGUCGACGACGAa -3'
miRNA:   3'- uagGUCa-AGcuUUGGCGGUUGCUGCU- -5'
897 3' -51.6 NC_000899.1 + 44268 0.66 0.838541
Target:  5'- -gUUGGUUCGAAAauGCCAGCGGUGAu -3'
miRNA:   3'- uaGGUCAAGCUUUggCGGUUGCUGCU- -5'
897 3' -51.6 NC_000899.1 + 1454 0.66 0.838541
Target:  5'- uAUCUGccUCGAGagcgGCCGCCAguugaACGGCGAa -3'
miRNA:   3'- -UAGGUcaAGCUU----UGGCGGU-----UGCUGCU- -5'
897 3' -51.6 NC_000899.1 + 38804 0.67 0.778623
Target:  5'- aGUCCGGcgCGGgugcaguGGCgGCCAACGGCc- -3'
miRNA:   3'- -UAGGUCaaGCU-------UUGgCGGUUGCUGcu -5'
897 3' -51.6 NC_000899.1 + 13240 0.68 0.747823
Target:  5'- cUCCAaaacGUUCGGAACgcgagcgcgggCGCCGGCGGgGAa -3'
miRNA:   3'- uAGGU----CAAGCUUUG-----------GCGGUUGCUgCU- -5'
897 3' -51.6 NC_000899.1 + 14253 0.68 0.725938
Target:  5'- cGUCCGGUgCGGuuCCGUCAGaagcgcauCGGCGAg -3'
miRNA:   3'- -UAGGUCAaGCUuuGGCGGUU--------GCUGCU- -5'
897 3' -51.6 NC_000899.1 + 16178 0.68 0.725938
Target:  5'- aAUCCGGagccUGAcauGCCGCCGACG-CGAg -3'
miRNA:   3'- -UAGGUCaa--GCUu--UGGCGGUUGCuGCU- -5'
897 3' -51.6 NC_000899.1 + 10365 0.69 0.692383
Target:  5'- -aCCGGUaggcgCGGAACCGCCgGGCaACGAa -3'
miRNA:   3'- uaGGUCAa----GCUUUGGCGG-UUGcUGCU- -5'
897 3' -51.6 NC_000899.1 + 9787 0.7 0.635358
Target:  5'- aGUCUuGUUCGuAACCGCCGAUGGaGAc -3'
miRNA:   3'- -UAGGuCAAGCuUUGGCGGUUGCUgCU- -5'
897 3' -51.6 NC_000899.1 + 9890 0.7 0.623897
Target:  5'- -gCCAGUgccccuaCGAGGCCGUCAACGAa-- -3'
miRNA:   3'- uaGGUCAa------GCUUUGGCGGUUGCUgcu -5'
897 3' -51.6 NC_000899.1 + 13667 0.72 0.489751
Target:  5'- -aCCGGggUCGcgugcuGACCGCCGACGACu- -3'
miRNA:   3'- uaGGUCa-AGCu-----UUGGCGGUUGCUGcu -5'
897 3' -51.6 NC_000899.1 + 5489 1.07 0.002543
Target:  5'- cAUCCAGUUCGAAACCGCCAACGACGAc -3'
miRNA:   3'- -UAGGUCAAGCUUUGGCGGUUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.