miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 3' -52.6 NC_002512.2 + 29748 0.66 0.991174
Target:  5'- aUGGCUGUCGUcguagacgacagAGUUgGUGAugUGGCg- -3'
miRNA:   3'- cAUCGACAGCA------------UCGAgUACU--ACCGgu -5'
8970 3' -52.6 NC_002512.2 + 74381 0.66 0.988563
Target:  5'- --cGCcGUCGUcgcagcAGCUCAUGggGGuCCGg -3'
miRNA:   3'- cauCGaCAGCA------UCGAGUACuaCC-GGU- -5'
8970 3' -52.6 NC_002512.2 + 103305 0.66 0.988563
Target:  5'- -cGGCcGUCGUAGgaCAgGAcGGCCGa -3'
miRNA:   3'- caUCGaCAGCAUCgaGUaCUaCCGGU- -5'
8970 3' -52.6 NC_002512.2 + 91391 0.66 0.98539
Target:  5'- --cGCUG-CGgcGCUgCGUGgcGGCCAu -3'
miRNA:   3'- cauCGACaGCauCGA-GUACuaCCGGU- -5'
8970 3' -52.6 NC_002512.2 + 203906 0.66 0.98539
Target:  5'- -cAGCUGUUcaacgAGCUCGUGcuAUGGCUc -3'
miRNA:   3'- caUCGACAGca---UCGAGUAC--UACCGGu -5'
8970 3' -52.6 NC_002512.2 + 200753 0.67 0.979423
Target:  5'- -gGGCgugGUCGUcGUaCAUGGUGGUCGc -3'
miRNA:   3'- caUCGa--CAGCAuCGaGUACUACCGGU- -5'
8970 3' -52.6 NC_002512.2 + 81604 0.67 0.97708
Target:  5'- uGUAGCUGagGU-GCUCGUc--GGCCAg -3'
miRNA:   3'- -CAUCGACagCAuCGAGUAcuaCCGGU- -5'
8970 3' -52.6 NC_002512.2 + 113464 0.68 0.968876
Target:  5'- gGUGGaccaUGUCGUAGCuguUCGcGAaGGCCAg -3'
miRNA:   3'- -CAUCg---ACAGCAUCG---AGUaCUaCCGGU- -5'
8970 3' -52.6 NC_002512.2 + 107634 0.7 0.921551
Target:  5'- -cGGCUGccCGUGGUUCGcgUGGUGGCuCAg -3'
miRNA:   3'- caUCGACa-GCAUCGAGU--ACUACCG-GU- -5'
8970 3' -52.6 NC_002512.2 + 101389 0.71 0.876291
Target:  5'- --uGCUcGUCGgAGCUCGUGGUGGUg- -3'
miRNA:   3'- cauCGA-CAGCaUCGAGUACUACCGgu -5'
8970 3' -52.6 NC_002512.2 + 136355 0.72 0.853464
Target:  5'- --cGCggGUCGgucGCUCGuUGAUGGCCAg -3'
miRNA:   3'- cauCGa-CAGCau-CGAGU-ACUACCGGU- -5'
8970 3' -52.6 NC_002512.2 + 198347 0.73 0.820189
Target:  5'- cGUAGUUGUCGUAGgUCAccgccgUGuccGUGGCCu -3'
miRNA:   3'- -CAUCGACAGCAUCgAGU------AC---UACCGGu -5'
8970 3' -52.6 NC_002512.2 + 202860 1.09 0.007875
Target:  5'- cGUAGCUGUCGUAGCUCAUGAUGGCCAc -3'
miRNA:   3'- -CAUCGACAGCAUCGAGUACUACCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.