miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8971 3' -51.2 NC_002512.2 + 119589 0.66 0.998106
Target:  5'- uGAUGcGCUGGauG-UGCCGCAGcUGGu -3'
miRNA:   3'- -CUACuUGACUgcCuACGGCGUCaACU- -5'
8971 3' -51.2 NC_002512.2 + 39095 0.66 0.997745
Target:  5'- --cGGACgcgagGaaGCGGAUGCgGCuGUUGAc -3'
miRNA:   3'- cuaCUUGa----C--UGCCUACGgCGuCAACU- -5'
8971 3' -51.2 NC_002512.2 + 71474 0.66 0.997745
Target:  5'- --cGAACUGGaaGAUGUCGCGGg--- -3'
miRNA:   3'- cuaCUUGACUgcCUACGGCGUCaacu -5'
8971 3' -51.2 NC_002512.2 + 203359 0.66 0.99733
Target:  5'- --cGAGCUGcCGaccagGCCGCGGUUGc -3'
miRNA:   3'- cuaCUUGACuGCcua--CGGCGUCAACu -5'
8971 3' -51.2 NC_002512.2 + 28525 0.66 0.996852
Target:  5'- gGGUGAGCUGuCGGGUccGCCGCc----- -3'
miRNA:   3'- -CUACUUGACuGCCUA--CGGCGucaacu -5'
8971 3' -51.2 NC_002512.2 + 5899 0.66 0.996852
Target:  5'- cGUGGAC-GGCGGG-GCgCGCGGggGAu -3'
miRNA:   3'- cUACUUGaCUGCCUaCG-GCGUCaaCU- -5'
8971 3' -51.2 NC_002512.2 + 64763 0.66 0.9968
Target:  5'- --cGAACaGGCGGAUGacguuccCCGCGGgaGAg -3'
miRNA:   3'- cuaCUUGaCUGCCUAC-------GGCGUCaaCU- -5'
8971 3' -51.2 NC_002512.2 + 200376 0.66 0.995684
Target:  5'- gGGUGAGg-GGCGGggGCUGCAGg--- -3'
miRNA:   3'- -CUACUUgaCUGCCuaCGGCGUCaacu -5'
8971 3' -51.2 NC_002512.2 + 42564 0.67 0.994979
Target:  5'- aGGUGAcACgGGCGGgcGCCGCgAGgcGAg -3'
miRNA:   3'- -CUACU-UGaCUGCCuaCGGCG-UCaaCU- -5'
8971 3' -51.2 NC_002512.2 + 81082 0.67 0.994979
Target:  5'- --cGAGCUccgaGACGG-UGCCGCAGc--- -3'
miRNA:   3'- cuaCUUGA----CUGCCuACGGCGUCaacu -5'
8971 3' -51.2 NC_002512.2 + 79741 0.67 0.994099
Target:  5'- --cGGGCUGGCGGAcGCCgacacgaGCGGggUGAc -3'
miRNA:   3'- cuaCUUGACUGCCUaCGG-------CGUCa-ACU- -5'
8971 3' -51.2 NC_002512.2 + 14610 0.67 0.991174
Target:  5'- aGAUGGggaaguAgUGGCGGAgGCCGCGcUUGAg -3'
miRNA:   3'- -CUACU------UgACUGCCUaCGGCGUcAACU- -5'
8971 3' -51.2 NC_002512.2 + 146952 0.68 0.989935
Target:  5'- cGUGAagcGCgacGACGGcgGCCGCGGccGAg -3'
miRNA:   3'- cUACU---UGa--CUGCCuaCGGCGUCaaCU- -5'
8971 3' -51.2 NC_002512.2 + 60235 0.68 0.989935
Target:  5'- -cUGGucCUGGCGGAgaucaUGCCGCAGa--- -3'
miRNA:   3'- cuACUu-GACUGCCU-----ACGGCGUCaacu -5'
8971 3' -51.2 NC_002512.2 + 193882 0.68 0.98539
Target:  5'- cGGUGGACgacgcggGAgCGGGUcGCCGCGGUcGGc -3'
miRNA:   3'- -CUACUUGa------CU-GCCUA-CGGCGUCAaCU- -5'
8971 3' -51.2 NC_002512.2 + 33193 0.69 0.981584
Target:  5'- --cGGGCUGGCGGAcggUGCCGCu----- -3'
miRNA:   3'- cuaCUUGACUGCCU---ACGGCGucaacu -5'
8971 3' -51.2 NC_002512.2 + 226715 0.69 0.971813
Target:  5'- --cGAGC-GACGGGagGCCGCGGgcGAc -3'
miRNA:   3'- cuaCUUGaCUGCCUa-CGGCGUCaaCU- -5'
8971 3' -51.2 NC_002512.2 + 47963 0.7 0.962361
Target:  5'- --cGAGgUGGCGGAgGCCGCGGa--- -3'
miRNA:   3'- cuaCUUgACUGCCUaCGGCGUCaacu -5'
8971 3' -51.2 NC_002512.2 + 32854 0.71 0.94209
Target:  5'- --gGAGgUGACGGugccguggGUGCCGCGGUaGAg -3'
miRNA:   3'- cuaCUUgACUGCC--------UACGGCGUCAaCU- -5'
8971 3' -51.2 NC_002512.2 + 124309 0.72 0.909814
Target:  5'- cGcgGAGCUGAuCGGG-GCCGCGGcgGAc -3'
miRNA:   3'- -CuaCUUGACU-GCCUaCGGCGUCaaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.