miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 5' -52.3 NC_002512.2 + 102488 0.66 0.994226
Target:  5'- -cGGUGGc-GGUCccgCAGGCGGCg-- -3'
miRNA:   3'- gaCCAUCuuCUAGaa-GUCCGCCGagu -5'
8972 5' -52.3 NC_002512.2 + 169139 0.66 0.994226
Target:  5'- aCUGGUugGGggGuugGUCUUUGGGCGGg--- -3'
miRNA:   3'- -GACCA--UCuuC---UAGAAGUCCGCCgagu -5'
8972 5' -52.3 NC_002512.2 + 32631 0.66 0.992353
Target:  5'- -gGGU-GAAGAUCUUgaagcugucggcCAGGCGGUa-- -3'
miRNA:   3'- gaCCAuCUUCUAGAA------------GUCCGCCGagu -5'
8972 5' -52.3 NC_002512.2 + 185929 0.66 0.991251
Target:  5'- -gGGUcgacgAGAAGggCUUCAGGaCGGCc-- -3'
miRNA:   3'- gaCCA-----UCUUCuaGAAGUCC-GCCGagu -5'
8972 5' -52.3 NC_002512.2 + 226586 0.67 0.988673
Target:  5'- aUGGcgAGGAGGcaUCgu-GGGCGGCUCu -3'
miRNA:   3'- gACCa-UCUUCU--AGaagUCCGCCGAGu -5'
8972 5' -52.3 NC_002512.2 + 201700 0.67 0.983744
Target:  5'- uCUGGUGcGGGAUCggC-GGCGGCgUCGu -3'
miRNA:   3'- -GACCAUcUUCUAGaaGuCCGCCG-AGU- -5'
8972 5' -52.3 NC_002512.2 + 189746 0.67 0.983744
Target:  5'- -aGGagAGGAGGUCUUCgAGGCGGg--- -3'
miRNA:   3'- gaCCa-UCUUCUAGAAG-UCCGCCgagu -5'
8972 5' -52.3 NC_002512.2 + 130258 0.68 0.979652
Target:  5'- uUGGU-GAGGAUCa--GGGCGGC-CGg -3'
miRNA:   3'- gACCAuCUUCUAGaagUCCGCCGaGU- -5'
8972 5' -52.3 NC_002512.2 + 5410 0.69 0.954339
Target:  5'- -aGGUagGGAAGAUCUuuuggagucggguuUCGuuGGUGGCUCGa -3'
miRNA:   3'- gaCCA--UCUUCUAGA--------------AGU--CCGCCGAGU- -5'
8972 5' -52.3 NC_002512.2 + 108370 0.69 0.951518
Target:  5'- -gGGUGGggGAUCgggagggCGGGgGGCg-- -3'
miRNA:   3'- gaCCAUCuuCUAGaa-----GUCCgCCGagu -5'
8972 5' -52.3 NC_002512.2 + 200683 0.7 0.927984
Target:  5'- -gGGUAGAAGGUgUacucggucgucUCGGGUGGCgUCGg -3'
miRNA:   3'- gaCCAUCUUCUAgA-----------AGUCCGCCG-AGU- -5'
8972 5' -52.3 NC_002512.2 + 204381 0.74 0.786641
Target:  5'- gCUGGcGGGAGAUCUgcgAGGCGGCccUCGa -3'
miRNA:   3'- -GACCaUCUUCUAGAag-UCCGCCG--AGU- -5'
8972 5' -52.3 NC_002512.2 + 113076 0.74 0.771689
Target:  5'- -aGGUAGAAGAUCUUguGGUGcacgaauuccucgucGCUCGu -3'
miRNA:   3'- gaCCAUCUUCUAGAAguCCGC---------------CGAGU- -5'
8972 5' -52.3 NC_002512.2 + 127710 0.78 0.575829
Target:  5'- -aGGUGGAGGAUCUUCGuGCGGUauUCAc -3'
miRNA:   3'- gaCCAUCUUCUAGAAGUcCGCCG--AGU- -5'
8972 5' -52.3 NC_002512.2 + 201029 1.09 0.008864
Target:  5'- uCUGGUAGAAGAUCUUCAGGCGGCUCAg -3'
miRNA:   3'- -GACCAUCUUCUAGAAGUCCGCCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.