miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 3' -62.9 NC_002512.2 + 192614 0.66 0.717093
Target:  5'- cGCGGCG-GGCGACGGc-GGCCUc--- -3'
miRNA:   3'- -CGUCGCaCCGCUGCCccCCGGGcuuc -5'
8974 3' -62.9 NC_002512.2 + 227882 0.66 0.717093
Target:  5'- cCGGCucaGGCGACGcGGGcGaGUCCGAGGc -3'
miRNA:   3'- cGUCGca-CCGCUGC-CCC-C-CGGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 106692 0.66 0.707876
Target:  5'- cGCGGUGUucGGCGAUGGGGcucUCCGGGa -3'
miRNA:   3'- -CGUCGCA--CCGCUGCCCCcc-GGGCUUc -5'
8974 3' -62.9 NC_002512.2 + 104426 0.66 0.707876
Target:  5'- uCAGCGUcGuCGAUGGGGGGCgaugucuuCCGGu- -3'
miRNA:   3'- cGUCGCAcC-GCUGCCCCCCG--------GGCUuc -5'
8974 3' -62.9 NC_002512.2 + 134182 0.66 0.707876
Target:  5'- gGCGGCGUucuucGGCGACGuGcGGGagaucgaCCUGAAGg -3'
miRNA:   3'- -CGUCGCA-----CCGCUGC-C-CCCc------GGGCUUC- -5'
8974 3' -62.9 NC_002512.2 + 97379 0.66 0.707876
Target:  5'- cGCGGCGgccGGaGACGGGggcGGGCgCGAc- -3'
miRNA:   3'- -CGUCGCa--CCgCUGCCC---CCCGgGCUuc -5'
8974 3' -62.9 NC_002512.2 + 17848 0.66 0.707876
Target:  5'- aGCAGCuccucccgGGCG-CGGuGcucgcgcaGGGCCCGggGg -3'
miRNA:   3'- -CGUCGca------CCGCuGCC-C--------CCCGGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 80824 0.66 0.707876
Target:  5'- uCGGCGU--CGGCGGaGGGGCCCcguAGg -3'
miRNA:   3'- cGUCGCAccGCUGCC-CCCCGGGcu-UC- -5'
8974 3' -62.9 NC_002512.2 + 124762 0.66 0.70695
Target:  5'- uGCGGCGa--CGACGGGugcgagggcugccGGGaCCCGggGa -3'
miRNA:   3'- -CGUCGCaccGCUGCCC-------------CCC-GGGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 144265 0.66 0.702318
Target:  5'- gGCAGCGggcgaagucccagaGGCGGCGGaGGcaCCCGAAc -3'
miRNA:   3'- -CGUCGCa-------------CCGCUGCC-CCccGGGCUUc -5'
8974 3' -62.9 NC_002512.2 + 226226 0.66 0.698603
Target:  5'- cCGGacCGUcGGCcGCGaGGGGGCCgGAGGa -3'
miRNA:   3'- cGUC--GCA-CCGcUGC-CCCCCGGgCUUC- -5'
8974 3' -62.9 NC_002512.2 + 92922 0.66 0.698603
Target:  5'- uGCAGCacauuaacGGUua-GGGGGGCCCuGGAGg -3'
miRNA:   3'- -CGUCGca------CCGcugCCCCCCGGG-CUUC- -5'
8974 3' -62.9 NC_002512.2 + 197839 0.66 0.698603
Target:  5'- uGCAuCGaggGGCGGCGGGaGGCCCu--- -3'
miRNA:   3'- -CGUcGCa--CCGCUGCCCcCCGGGcuuc -5'
8974 3' -62.9 NC_002512.2 + 133794 0.66 0.698603
Target:  5'- gGCGGCGgGGaCGACGGucgcgccGGGUgCGggGg -3'
miRNA:   3'- -CGUCGCaCC-GCUGCCc------CCCGgGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 75074 0.67 0.689283
Target:  5'- gGCGGCGacgucgaGGCGcCGuuucGGGGGCUCGAc- -3'
miRNA:   3'- -CGUCGCa------CCGCuGC----CCCCCGGGCUuc -5'
8974 3' -62.9 NC_002512.2 + 96349 0.67 0.689283
Target:  5'- aGCAGgaguauuaGUGGCGAgaucaucuCGGGGGGaggagaggaaaCCGggGa -3'
miRNA:   3'- -CGUCg-------CACCGCU--------GCCCCCCg----------GGCuuC- -5'
8974 3' -62.9 NC_002512.2 + 95760 0.67 0.689283
Target:  5'- cGCcGCGacGGCcgccugGACGGGGGcGUCCGAGc -3'
miRNA:   3'- -CGuCGCa-CCG------CUGCCCCC-CGGGCUUc -5'
8974 3' -62.9 NC_002512.2 + 169796 0.67 0.688349
Target:  5'- aCGGCGUGGgaggggucugaucUGugGguGGGGGUCCGAu- -3'
miRNA:   3'- cGUCGCACC-------------GCugC--CCCCCGGGCUuc -5'
8974 3' -62.9 NC_002512.2 + 140927 0.67 0.679923
Target:  5'- cGCGGCGgcucgggacGGCGACgaggcggaaggGGGGcGGCUCGGu- -3'
miRNA:   3'- -CGUCGCa--------CCGCUG-----------CCCC-CCGGGCUuc -5'
8974 3' -62.9 NC_002512.2 + 99900 0.67 0.679923
Target:  5'- cGCGGCccgucgagGGCG-CcGGGGGCCCgccGAAGg -3'
miRNA:   3'- -CGUCGca------CCGCuGcCCCCCGGG---CUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.