Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8975 | 5' | -56 | NC_002512.2 | + | 199891 | 0.66 | 0.943371 |
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Target: 5'- cGCCCUGGucucGAGAc-CGC-CCGUGUCu -3' miRNA: 3'- -CGGGACCuc--UUCUacGCGcGGUACAG- -5' |
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| 8975 | 5' | -56 | NC_002512.2 | + | 76349 | 0.66 | 0.943371 |
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Target: 5'- uCCC-GGAGAAGAUGUcgagcgacauGCaGCCGUGa- -3' miRNA: 3'- cGGGaCCUCUUCUACG----------CG-CGGUACag -5' |
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| 8975 | 5' | -56 | NC_002512.2 | + | 146819 | 0.66 | 0.943371 |
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Target: 5'- -aCCUGGAGAccuucGCGCGCgAgGUCg -3' miRNA: 3'- cgGGACCUCUucua-CGCGCGgUaCAG- -5' |
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| 8975 | 5' | -56 | NC_002512.2 | + | 141423 | 0.66 | 0.947694 |
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Target: 5'- aUCCUGGAGAGGGgacUGCccCGCCugcugGUCc -3' miRNA: 3'- cGGGACCUCUUCU---ACGc-GCGGua---CAG- -5' |
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| 8975 | 5' | -56 | NC_002512.2 | + | 55945 | 0.66 | 0.947694 |
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Target: 5'- aCUCUGGAGAuGG-GCGUGUUGUGUUc -3' miRNA: 3'- cGGGACCUCUuCUaCGCGCGGUACAG- -5' |
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| 8975 | 5' | -56 | NC_002512.2 | + | 187052 | 0.66 | 0.951793 |
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Target: 5'- uCCCUGGAGAcgggcuGGAUGaCGUcucaggagGCCGUGc- -3' miRNA: 3'- cGGGACCUCU------UCUAC-GCG--------CGGUACag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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