Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8975 | 5' | -56 | NC_002512.2 | + | 207454 | 0.68 | 0.873763 |
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Target: 5'- aGCCCagcGGAuGggGuUGCGCGuCCGaGUCg -3' miRNA: 3'- -CGGGa--CCU-CuuCuACGCGC-GGUaCAG- -5' |
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| 8975 | 5' | -56 | NC_002512.2 | + | 211883 | 0.69 | 0.851468 |
|
Target: 5'- cGCCCUGGAGcGGGUcaccuuccgGgGCuGCCGcGUCg -3' miRNA: 3'- -CGGGACCUCuUCUA---------CgCG-CGGUaCAG- -5' |
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| 8975 | 5' | -56 | NC_002512.2 | + | 218092 | 0.67 | 0.906713 |
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Target: 5'- uGUCCgUGGGGAAGcgGgcguCGCGCCcgggGUCg -3' miRNA: 3'- -CGGG-ACCUCUUCuaC----GCGCGGua--CAG- -5' |
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| 8975 | 5' | -56 | NC_002512.2 | + | 220529 | 0.7 | 0.819099 |
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Target: 5'- -aCCUGGAGGAGcUGCuGCGCgAgggcGUCa -3' miRNA: 3'- cgGGACCUCUUCuACG-CGCGgUa---CAG- -5' |
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| 8975 | 5' | -56 | NC_002512.2 | + | 220982 | 0.66 | 0.934043 |
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Target: 5'- cGCCCUGGccaGGAGGGUcgaGUGCcCCAacggcuucUGUCa -3' miRNA: 3'- -CGGGACC---UCUUCUA---CGCGcGGU--------ACAG- -5' |
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| 8975 | 5' | -56 | NC_002512.2 | + | 222695 | 0.7 | 0.793083 |
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Target: 5'- cGCCCggcacGGGGAGGAgUGCGuCGCCAccUGcCu -3' miRNA: 3'- -CGGGa----CCUCUUCU-ACGC-GCGGU--ACaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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