miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8976 3' -55.2 NC_002512.2 + 197611 1.05 0.007856
Target:  5'- cUCCUCAUGCGGGCCGCCUAUUUCGAUc -3'
miRNA:   3'- -AGGAGUACGCCCGGCGGAUAAAGCUA- -5'
8976 3' -55.2 NC_002512.2 + 204021 0.74 0.607332
Target:  5'- gCUUCGUGCGGGCCGacggcgaacucucgcCCUAcUUCGGUc -3'
miRNA:   3'- aGGAGUACGCCCGGC---------------GGAUaAAGCUA- -5'
8976 3' -55.2 NC_002512.2 + 78847 0.72 0.723793
Target:  5'- aCCgCGUGaCGGGCCGCCgcc-UCGAg -3'
miRNA:   3'- aGGaGUAC-GCCCGGCGGauaaAGCUa -5'
8976 3' -55.2 NC_002512.2 + 142575 0.72 0.723793
Target:  5'- aCCUCAucgucUGCGuGGCCGCCUcc-UCGGa -3'
miRNA:   3'- aGGAGU-----ACGC-CCGGCGGAuaaAGCUa -5'
8976 3' -55.2 NC_002512.2 + 183485 0.71 0.771571
Target:  5'- gCCgugC-UGCGGGCCGCCUAcggccgCGAg -3'
miRNA:   3'- aGGa--GuACGCCCGGCGGAUaaa---GCUa -5'
8976 3' -55.2 NC_002512.2 + 118895 0.7 0.807655
Target:  5'- uUCCUCGaGCGGGCgGCC----UCGGUc -3'
miRNA:   3'- -AGGAGUaCGCCCGgCGGauaaAGCUA- -5'
8976 3' -55.2 NC_002512.2 + 101592 0.7 0.824796
Target:  5'- gUCCccgcggUCGUGCGGGCgGCCg---UCGGc -3'
miRNA:   3'- -AGG------AGUACGCCCGgCGGauaaAGCUa -5'
8976 3' -55.2 NC_002512.2 + 158221 0.69 0.86452
Target:  5'- aCCUCcUGUccGGGCCGCCcaagUUCGGc -3'
miRNA:   3'- aGGAGuACG--CCCGGCGGaua-AAGCUa -5'
8976 3' -55.2 NC_002512.2 + 197189 0.69 0.871874
Target:  5'- gUCCUCAUGgacccgcucgGGGCCGUCUAcggcUUCGAc -3'
miRNA:   3'- -AGGAGUACg---------CCCGGCGGAUa---AAGCUa -5'
8976 3' -55.2 NC_002512.2 + 114016 0.69 0.879017
Target:  5'- gUCgUCcgGCGGGcCCGCCUcgg-CGAa -3'
miRNA:   3'- -AGgAGuaCGCCC-GGCGGAuaaaGCUa -5'
8976 3' -55.2 NC_002512.2 + 162000 0.69 0.885262
Target:  5'- aCCUgGUGCGGGaugcggaCCGCCUGgc-CGAc -3'
miRNA:   3'- aGGAgUACGCCC-------GGCGGAUaaaGCUa -5'
8976 3' -55.2 NC_002512.2 + 135679 0.68 0.905396
Target:  5'- gUCCUCGUG-GGGCUGCUggggcucUUCGGc -3'
miRNA:   3'- -AGGAGUACgCCCGGCGGaua----AAGCUa -5'
8976 3' -55.2 NC_002512.2 + 129035 0.68 0.911424
Target:  5'- aCCggcCGUGCGGGUCGUCUGUca-GAa -3'
miRNA:   3'- aGGa--GUACGCCCGGCGGAUAaagCUa -5'
8976 3' -55.2 NC_002512.2 + 87850 0.68 0.91722
Target:  5'- cCCUCGcgGCGGGUCGCCggccccCGGc -3'
miRNA:   3'- aGGAGUa-CGCCCGGCGGauaaa-GCUa -5'
8976 3' -55.2 NC_002512.2 + 134056 0.67 0.922783
Target:  5'- gCCUCcUGCGGGCCGUCg-------- -3'
miRNA:   3'- aGGAGuACGCCCGGCGGauaaagcua -5'
8976 3' -55.2 NC_002512.2 + 134705 0.67 0.928112
Target:  5'- gUCCUCucGCGGGCgcucucCGCCUAg--CGAg -3'
miRNA:   3'- -AGGAGuaCGCCCG------GCGGAUaaaGCUa -5'
8976 3' -55.2 NC_002512.2 + 135269 0.67 0.933206
Target:  5'- -gCUCGacgagGCcuGGGCCGCCUGcUUCGGg -3'
miRNA:   3'- agGAGUa----CG--CCCGGCGGAUaAAGCUa -5'
8976 3' -55.2 NC_002512.2 + 106898 0.67 0.933206
Target:  5'- cUCCUUcgGCGGGauCCGCCUcUUccucguccucgUCGAg -3'
miRNA:   3'- -AGGAGuaCGCCC--GGCGGAuAA-----------AGCUa -5'
8976 3' -55.2 NC_002512.2 + 117715 0.67 0.942243
Target:  5'- cUCCgcgCGUGCGGGCucgagcgccggcuCGCCg---UCGAc -3'
miRNA:   3'- -AGGa--GUACGCCCG-------------GCGGauaaAGCUa -5'
8976 3' -55.2 NC_002512.2 + 86704 0.67 0.947092
Target:  5'- cCCUCGUGCaGGGCgCGCaCUA---CGAg -3'
miRNA:   3'- aGGAGUACG-CCCG-GCG-GAUaaaGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.