miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 3' -56.5 NC_002512.2 + 120770 0.66 0.941038
Target:  5'- uGCugGACucgGCGgccgUCGgcggGGGCgGCGGGa -3'
miRNA:   3'- cUGugCUG---CGCa---AGCa---CCCGgCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 156503 0.66 0.941038
Target:  5'- gGACACGGCGgccUGggCGgcGGGgCGCGGGg -3'
miRNA:   3'- -CUGUGCUGC---GCaaGCa-CCCgGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 31809 0.66 0.936441
Target:  5'- aGACGCcggGGCGCGgUCGagGGGaCgCGCGAGa -3'
miRNA:   3'- -CUGUG---CUGCGCaAGCa-CCC-G-GCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 103347 0.66 0.936441
Target:  5'- gGGCGuCGACGaGUcCG-GGGCCGCGGu -3'
miRNA:   3'- -CUGU-GCUGCgCAaGCaCCCGGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 135125 0.67 0.931622
Target:  5'- cGGCGCGACGCuc-CGaGGGCCGgGc- -3'
miRNA:   3'- -CUGUGCUGCGcaaGCaCCCGGCgUuc -5'
8977 3' -56.5 NC_002512.2 + 224342 0.67 0.92658
Target:  5'- -cCGCGGCGCcg-CGccgGGGUCGCGGGc -3'
miRNA:   3'- cuGUGCUGCGcaaGCa--CCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 124741 0.67 0.921315
Target:  5'- cGACuCGGCcUGUUCGUGGaGCCGUc-- -3'
miRNA:   3'- -CUGuGCUGcGCAAGCACC-CGGCGuuc -5'
8977 3' -56.5 NC_002512.2 + 216796 0.67 0.921315
Target:  5'- aACACGGCGuCGUUgaCGaUGGcGUCGCGGGu -3'
miRNA:   3'- cUGUGCUGC-GCAA--GC-ACC-CGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 221393 0.67 0.921315
Target:  5'- gGGCGgGGCGCGggCGggGaGGCgGCGGGu -3'
miRNA:   3'- -CUGUgCUGCGCaaGCa-C-CCGgCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 94799 0.67 0.921315
Target:  5'- cGCACGACGCGgagacgCGgggGGaGCCGUc-- -3'
miRNA:   3'- cUGUGCUGCGCaa----GCa--CC-CGGCGuuc -5'
8977 3' -56.5 NC_002512.2 + 124764 0.67 0.915826
Target:  5'- cGGCgACGACGgGUgCGaGGGCUGCcGGg -3'
miRNA:   3'- -CUG-UGCUGCgCAaGCaCCCGGCGuUC- -5'
8977 3' -56.5 NC_002512.2 + 104781 0.67 0.915826
Target:  5'- --gACGGCGCGUggCG-GGGuCCGCGc- -3'
miRNA:   3'- cugUGCUGCGCAa-GCaCCC-GGCGUuc -5'
8977 3' -56.5 NC_002512.2 + 216052 0.67 0.910116
Target:  5'- --uGCGACggGCGUUCG-GGGCCGgGu- -3'
miRNA:   3'- cugUGCUG--CGCAAGCaCCCGGCgUuc -5'
8977 3' -56.5 NC_002512.2 + 145190 0.67 0.910116
Target:  5'- cGCGCGcACGgaGUUCGaccccGGGCUGCGGGa -3'
miRNA:   3'- cUGUGC-UGCg-CAAGCa----CCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 181555 0.67 0.910116
Target:  5'- cGCGCGAUGUccucGUUCGUGGgguccgucugcgGCgGCAGGg -3'
miRNA:   3'- cUGUGCUGCG----CAAGCACC------------CGgCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 9735 0.67 0.910116
Target:  5'- aGCACGACGCccUUGgGGGCgGCGGa -3'
miRNA:   3'- cUGUGCUGCGcaAGCaCCCGgCGUUc -5'
8977 3' -56.5 NC_002512.2 + 5160 0.67 0.910116
Target:  5'- cGGCAgCGGCGCGacCG-GGGCgGCGGc -3'
miRNA:   3'- -CUGU-GCUGCGCaaGCaCCCGgCGUUc -5'
8977 3' -56.5 NC_002512.2 + 95947 0.67 0.904186
Target:  5'- -uCAgGACGCGggcCGUcGGGCCGCc-- -3'
miRNA:   3'- cuGUgCUGCGCaa-GCA-CCCGGCGuuc -5'
8977 3' -56.5 NC_002512.2 + 61695 0.67 0.902364
Target:  5'- gGAgACGAgGCGUgcguguccguucuuUCGcggGGGCCGCGu- -3'
miRNA:   3'- -CUgUGCUgCGCA--------------AGCa--CCCGGCGUuc -5'
8977 3' -56.5 NC_002512.2 + 64638 0.68 0.898037
Target:  5'- -cCGCGACGCGUccgcgaggUCGUGGaucacGUCGCGGa -3'
miRNA:   3'- cuGUGCUGCGCA--------AGCACC-----CGGCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.