miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 157071 0.66 0.777092
Target:  5'- cCCGGGguccgGGGUCGCC--GGcGCCCaCGGCg -3'
miRNA:   3'- aGGCCC-----UCUAGCGGgaCC-UGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 101808 0.67 0.695632
Target:  5'- uUCCGaGGAGG-CuUCCUGGGCgCCgCGACg -3'
miRNA:   3'- -AGGC-CCUCUaGcGGGACCUG-GG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 146801 0.67 0.695632
Target:  5'- aCCcGGAGGagGCCCgGGACCUgGAg -3'
miRNA:   3'- aGGcCCUCUagCGGGaCCUGGGgCUg -5'
8978 3' -62.2 NC_002512.2 + 202184 0.67 0.714243
Target:  5'- -aCGGGAGAaCGCgCguuccGGAUCgCCGACg -3'
miRNA:   3'- agGCCCUCUaGCGgGa----CCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 164269 0.66 0.741688
Target:  5'- gUCGGGucGAUCGCCUcGGGCUUCGuCu -3'
miRNA:   3'- aGGCCCu-CUAGCGGGaCCUGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 220970 0.68 0.671172
Target:  5'- cCCGGccGAGGcCGCCCUGGccaggagggucgaguGCCCCaACg -3'
miRNA:   3'- aGGCC--CUCUaGCGGGACC---------------UGGGGcUG- -5'
8978 3' -62.2 NC_002512.2 + 112475 0.67 0.686254
Target:  5'- cUCGGaGcGGAUgaCGCCCUGGuCCUCGAUg -3'
miRNA:   3'- aGGCC-C-UCUA--GCGGGACCuGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 146256 0.66 0.763119
Target:  5'- aCCGGGAccuggugggccgccuGAaCGCCgUGuccaACCCCGGCg -3'
miRNA:   3'- aGGCCCU---------------CUaGCGGgACc---UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 227951 0.67 0.713318
Target:  5'- -gCGGGGGAgCGCgggggagCCggagaggaGGGCCCCGGCg -3'
miRNA:   3'- agGCCCUCUaGCG-------GGa-------CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 121423 0.67 0.714243
Target:  5'- --aGGGAGA-CGCCCgcggagucGGCCCCGGa -3'
miRNA:   3'- aggCCCUCUaGCGGGac------CUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 127830 0.66 0.76839
Target:  5'- cUCCGGGAGGUCGUCggcGGcguccGCCgCGAa -3'
miRNA:   3'- -AGGCCCUCUAGCGGga-CC-----UGGgGCUg -5'
8978 3' -62.2 NC_002512.2 + 108510 0.66 0.777092
Target:  5'- gCCGGGcccggCGCCCgaccggccggGGACCCgaCGGCg -3'
miRNA:   3'- aGGCCCucua-GCGGGa---------CCUGGG--GCUG- -5'
8978 3' -62.2 NC_002512.2 + 138261 0.68 0.667389
Target:  5'- cCCGcuGGAGAUC-CCCgcggGGGCCCUG-Ca -3'
miRNA:   3'- aGGC--CCUCUAGcGGGa---CCUGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 204802 0.68 0.667389
Target:  5'- cCCGGGAGGUccgCGUCCcgGGGgCgCGGCg -3'
miRNA:   3'- aGGCCCUCUA---GCGGGa-CCUgGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 224367 0.67 0.695632
Target:  5'- -gCGGGAGAccUCgGUCCgGGAccucgcgaCCCCGGCg -3'
miRNA:   3'- agGCCCUCU--AG-CGGGaCCU--------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 196436 0.66 0.728961
Target:  5'- gUCGGGAGAggUCGgggccauggaauaCCUGGGCUgCGGCg -3'
miRNA:   3'- aGGCCCUCU--AGCg------------GGACCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 98233 0.66 0.732613
Target:  5'- cUCCGGGuGcucUCGUCgC-GGACCCCGuACu -3'
miRNA:   3'- -AGGCCCuCu--AGCGG-GaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 185420 0.66 0.777092
Target:  5'- cCCGGGg---CGCCCUGGAgguCUUCGAg -3'
miRNA:   3'- aGGCCCucuaGCGGGACCU---GGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 166404 0.67 0.714243
Target:  5'- cCCGGGGGAUgGUCCUGccGAgccugcccucuuCCCCGcCg -3'
miRNA:   3'- aGGCCCUCUAgCGGGAC--CU------------GGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 217522 0.67 0.704964
Target:  5'- cUCGGGGGGUCGCgguucaCCUGGuugaaCCgGGCg -3'
miRNA:   3'- aGGCCCUCUAGCG------GGACCug---GGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.