miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 224621 0.7 0.544648
Target:  5'- aCCGGGcucgGGGUCGCCgCcGcGGCCUCGGCc -3'
miRNA:   3'- aGGCCC----UCUAGCGG-GaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 205101 0.7 0.535417
Target:  5'- cUCgGGGGGcgCGCCC-GGACCCgaGCg -3'
miRNA:   3'- -AGgCCCUCuaGCGGGaCCUGGGgcUG- -5'
8978 3' -62.2 NC_002512.2 + 10215 0.7 0.544648
Target:  5'- cUCGGGcGGcgCGCCCa-GAUCCCGACg -3'
miRNA:   3'- aGGCCC-UCuaGCGGGacCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 141453 0.7 0.525328
Target:  5'- gUCCGGGAcgccugcgguuucGucuUCGCCCUGGACcacaacguguCCCGGu -3'
miRNA:   3'- -AGGCCCU-------------Cu--AGCGGGACCUG----------GGGCUg -5'
8978 3' -62.2 NC_002512.2 + 48744 0.7 0.49909
Target:  5'- gCCGcGGAGucguUCGUCCUGG-CCCUGGa -3'
miRNA:   3'- aGGC-CCUCu---AGCGGGACCuGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 112138 0.7 0.49909
Target:  5'- aUCGGGaAGAUCuggaacagGUCCUGGACCCUcGCa -3'
miRNA:   3'- aGGCCC-UCUAG--------CGGGACCUGGGGcUG- -5'
8978 3' -62.2 NC_002512.2 + 5524 0.7 0.49909
Target:  5'- cCCGGaccGAGGUcuccCGCCC-GcGACCCCGGCg -3'
miRNA:   3'- aGGCC---CUCUA----GCGGGaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 43654 0.7 0.544648
Target:  5'- aCCGGGAccUCGCCCUcGGuggcgGCCgCGGCg -3'
miRNA:   3'- aGGCCCUcuAGCGGGA-CC-----UGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 105513 0.7 0.508075
Target:  5'- -aCGGGGGGcUCuggCUGGACCCCGGCg -3'
miRNA:   3'- agGCCCUCU-AGcggGACCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 178640 0.69 0.579209
Target:  5'- uUuuGGGAGuguGUCucgagcgaaggaagGCCCagaGGACCCCGGCu -3'
miRNA:   3'- -AggCCCUC---UAG--------------CGGGa--CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 103463 0.69 0.567002
Target:  5'- gCCGGGcgggaggaggAGAggcggcgucgacggCGCCCgGGGCCCCGGg -3'
miRNA:   3'- aGGCCC----------UCUa-------------GCGGGaCCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 102618 0.69 0.599987
Target:  5'- gUCCGuGGAG-UCGCacagcacCCggagcaGGACCCCGAUg -3'
miRNA:   3'- -AGGC-CCUCuAGCG-------GGa-----CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 45396 0.69 0.572628
Target:  5'- gCCGGGAcuGUCGCUCgugcGGGCgCUCGACg -3'
miRNA:   3'- aGGCCCUc-UAGCGGGa---CCUG-GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 216301 0.69 0.600934
Target:  5'- cCCGGGgacguGGGUCaccuGCaUCUGcGGCCCCGACg -3'
miRNA:   3'- aGGCCC-----UCUAG----CG-GGAC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 192814 0.69 0.600934
Target:  5'- cCCGGGGcGAUCGCaCCgGGGCCaggugGACg -3'
miRNA:   3'- aGGCCCU-CUAGCG-GGaCCUGGgg---CUG- -5'
8978 3' -62.2 NC_002512.2 + 224020 0.69 0.600934
Target:  5'- gUCGGacGA-CGCCCgGGACUCCGACg -3'
miRNA:   3'- aGGCCcuCUaGCGGGaCCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 200219 0.69 0.55393
Target:  5'- cCCGaGGAGccggaGCCCgaGGAgCCCGACg -3'
miRNA:   3'- aGGC-CCUCuag--CGGGa-CCUgGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 134433 0.69 0.582034
Target:  5'- cCCaGGGGGuuccUCGCCCUGG-CCUucaaCGACg -3'
miRNA:   3'- aGG-CCCUCu---AGCGGGACCuGGG----GCUG- -5'
8978 3' -62.2 NC_002512.2 + 134003 0.69 0.591471
Target:  5'- gCCGGGcgaccucgAGAUCcucggcgcgcgGCCCUGGGaggacgccgcCCCCGGCc -3'
miRNA:   3'- aGGCCC--------UCUAG-----------CGGGACCU----------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 148966 0.69 0.55393
Target:  5'- gCCGGGAGggCGCCCgcgcGACCCa--- -3'
miRNA:   3'- aGGCCCUCuaGCGGGac--CUGGGgcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.