miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 86180 0.67 0.704964
Target:  5'- -gCGGGAGcuggaggucgCGCCCUccGugCCCGACa -3'
miRNA:   3'- agGCCCUCua--------GCGGGAc-CugGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 92517 0.71 0.490177
Target:  5'- uUCCGGGAGAcCGCgC-GGAUcuaCCCGGCc -3'
miRNA:   3'- -AGGCCCUCUaGCGgGaCCUG---GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 92728 0.67 0.676838
Target:  5'- gUCCGGGGGGcgCGCUCgguccgauGGCgCCGACg -3'
miRNA:   3'- -AGGCCCUCUa-GCGGGac------CUGgGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 94294 0.71 0.47258
Target:  5'- gCCGGGGagcGGUCGUCCacccGGuugcGCCCCGGCg -3'
miRNA:   3'- aGGCCCU---CUAGCGGGa---CC----UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 95242 0.67 0.704964
Target:  5'- cUCCGGaGGGggCGUCCggaGGGCCgCgCGGCu -3'
miRNA:   3'- -AGGCC-CUCuaGCGGGa--CCUGG-G-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 95752 0.66 0.758699
Target:  5'- gUCCGGGuuGAUCGUCa-GGAcgaagaaCCUCGGCg -3'
miRNA:   3'- -AGGCCCu-CUAGCGGgaCCU-------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 95972 0.67 0.67495
Target:  5'- gCCGuacagcaGGAGGUaggccagCGCCCgGGACCgCCGGCc -3'
miRNA:   3'- aGGC-------CCUCUA-------GCGGGaCCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 96291 0.68 0.610416
Target:  5'- gUCCGcaGGAGGcCgGCCCgcucgGGuCCCCGGCg -3'
miRNA:   3'- -AGGC--CCUCUaG-CGGGa----CCuGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 98233 0.66 0.732613
Target:  5'- cUCCGGGuGcucUCGUCgC-GGACCCCGuACu -3'
miRNA:   3'- -AGGCCCuCu--AGCGG-GaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 98968 0.67 0.714243
Target:  5'- aCCGGGccGAcCGCgCUUGaGACCCgGACg -3'
miRNA:   3'- aGGCCCu-CUaGCG-GGAC-CUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 99212 0.66 0.750682
Target:  5'- cUCCGcGGccgccgccguguGGGUCGUgcgcaUCUGGuGCCCCGGCg -3'
miRNA:   3'- -AGGC-CC------------UCUAGCG-----GGACC-UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 99609 0.67 0.727131
Target:  5'- cCCGGGccccgcgcucgucgcGGucGUCGCCCUcGGAgggCCCGGCg -3'
miRNA:   3'- aGGCCC---------------UC--UAGCGGGA-CCUg--GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 99957 0.67 0.676838
Target:  5'- gCCGGuGccuGAUCGgCCUGG-CCCCG-Cg -3'
miRNA:   3'- aGGCC-Cu--CUAGCgGGACCuGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 101449 0.66 0.741689
Target:  5'- gCUGGGccauGGcCGCCCgcgaggaGGGCUCCGGCg -3'
miRNA:   3'- aGGCCCu---CUaGCGGGa------CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 101808 0.67 0.695632
Target:  5'- uUCCGaGGAGG-CuUCCUGGGCgCCgCGACg -3'
miRNA:   3'- -AGGC-CCUCUaGcGGGACCUG-GG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 102208 0.71 0.48134
Target:  5'- -gCGGGAGAUCGCCgCggccGGAgcggcCCUCGACc -3'
miRNA:   3'- agGCCCUCUAGCGG-Ga---CCU-----GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 102353 0.69 0.582034
Target:  5'- gUCCGGGcgucGGUCGUccggagguCCUGGAgCCgGACg -3'
miRNA:   3'- -AGGCCCu---CUAGCG--------GGACCUgGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 102618 0.69 0.599987
Target:  5'- gUCCGuGGAG-UCGCacagcacCCggagcaGGACCCCGAUg -3'
miRNA:   3'- -AGGC-CCUCuAGCG-------GGa-----CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 102869 0.72 0.43838
Target:  5'- aCCGGGGGGaCGCCUacgggGGACCCgGGu -3'
miRNA:   3'- aGGCCCUCUaGCGGGa----CCUGGGgCUg -5'
8978 3' -62.2 NC_002512.2 + 103463 0.69 0.567002
Target:  5'- gCCGGGcgggaggaggAGAggcggcgucgacggCGCCCgGGGCCCCGGg -3'
miRNA:   3'- aGGCCC----------UCUa-------------GCGGGaCCUGGGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.