miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 127830 0.66 0.76839
Target:  5'- cUCCGGGAGGUCGUCggcGGcguccGCCgCGAa -3'
miRNA:   3'- -AGGCCCUCUAGCGGga-CC-----UGGgGCUg -5'
8978 3' -62.2 NC_002512.2 + 138261 0.68 0.667389
Target:  5'- cCCGcuGGAGAUC-CCCgcggGGGCCCUG-Ca -3'
miRNA:   3'- aGGC--CCUCUAGcGGGa---CCUGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 134203 0.69 0.582034
Target:  5'- -gCGGGAGAUCGaCCUGaaGGCCCCcuACa -3'
miRNA:   3'- agGCCCUCUAGCgGGAC--CUGGGGc-UG- -5'
8978 3' -62.2 NC_002512.2 + 183211 0.69 0.591471
Target:  5'- -gCGGGAGAUCGacgggaucgacCCCgaGGACCCCu-- -3'
miRNA:   3'- agGCCCUCUAGC-----------GGGa-CCUGGGGcug -5'
8978 3' -62.2 NC_002512.2 + 204802 0.68 0.667389
Target:  5'- cCCGGGAGGUccgCGUCCcgGGGgCgCGGCg -3'
miRNA:   3'- aGGCCCUCUA---GCGGGa-CCUgGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 196436 0.66 0.728961
Target:  5'- gUCGGGAGAggUCGgggccauggaauaCCUGGGCUgCGGCg -3'
miRNA:   3'- aGGCCCUCU--AGCg------------GGACCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 108510 0.66 0.777092
Target:  5'- gCCGGGcccggCGCCCgaccggccggGGACCCgaCGGCg -3'
miRNA:   3'- aGGCCCucua-GCGGGa---------CCUGGG--GCUG- -5'
8978 3' -62.2 NC_002512.2 + 185420 0.66 0.777092
Target:  5'- cCCGGGg---CGCCCUGGAgguCUUCGAg -3'
miRNA:   3'- aGGCCCucuaGCGGGACCU---GGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 166404 0.67 0.714243
Target:  5'- cCCGGGGGAUgGUCCUGccGAgccugcccucuuCCCCGcCg -3'
miRNA:   3'- aGGCCCUCUAgCGGGAC--CU------------GGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 101808 0.67 0.695632
Target:  5'- uUCCGaGGAGG-CuUCCUGGGCgCCgCGACg -3'
miRNA:   3'- -AGGC-CCUCUaGcGGGACCUG-GG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 224367 0.67 0.695632
Target:  5'- -gCGGGAGAccUCgGUCCgGGAccucgcgaCCCCGGCg -3'
miRNA:   3'- agGCCCUCU--AG-CGGGaCCU--------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 213811 0.67 0.714243
Target:  5'- cCCGGGAGGguuCCCUGGACgagaguCUCGAg -3'
miRNA:   3'- aGGCCCUCUagcGGGACCUG------GGGCUg -5'
8978 3' -62.2 NC_002512.2 + 211723 0.66 0.759585
Target:  5'- aCgGGGAGcugugccUCGgCCUGG-CCCgCGACg -3'
miRNA:   3'- aGgCCCUCu------AGCgGGACCuGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 222613 0.68 0.610416
Target:  5'- cCCGGGGccucgCGCCC--GAUCCCGACg -3'
miRNA:   3'- aGGCCCUcua--GCGGGacCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 42208 0.68 0.619913
Target:  5'- -aCGGGAGAUcCGUCCUGaccGugCCCG-Cg -3'
miRNA:   3'- agGCCCUCUA-GCGGGAC---CugGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 95972 0.67 0.67495
Target:  5'- gCCGuacagcaGGAGGUaggccagCGCCCgGGACCgCCGGCc -3'
miRNA:   3'- aGGC-------CCUCUA-------GCGGGaCCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 102618 0.69 0.599987
Target:  5'- gUCCGuGGAG-UCGCacagcacCCggagcaGGACCCCGAUg -3'
miRNA:   3'- -AGGC-CCUCuAGCG-------GGa-----CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 197381 1.09 0.001473
Target:  5'- gUCCGGGAGAUCGCCCUGGACCCCGACu -3'
miRNA:   3'- -AGGCCCUCUAGCGGGACCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 117086 0.69 0.582034
Target:  5'- -gCuGGAGGUgcgggcCGCCCUGGA-CCCGGCa -3'
miRNA:   3'- agGcCCUCUA------GCGGGACCUgGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 192814 0.69 0.600934
Target:  5'- cCCGGGGcGAUCGCaCCgGGGCCaggugGACg -3'
miRNA:   3'- aGGCCCU-CUAGCG-GGaCCUGGgg---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.