miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 104958 0.67 0.686254
Target:  5'- gUCGGGAGAUCGaCgCCgGGuccGCCUCGAg -3'
miRNA:   3'- aGGCCCUCUAGC-G-GGaCC---UGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 99957 0.67 0.676838
Target:  5'- gCCGGuGccuGAUCGgCCUGG-CCCCG-Cg -3'
miRNA:   3'- aGGCC-Cu--CUAGCgGGACCuGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 167810 0.67 0.704964
Target:  5'- -gCGGGcccccaacuacgAGGUgGCCgaGGACCCCGcGCa -3'
miRNA:   3'- agGCCC------------UCUAgCGGgaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 66578 0.67 0.695633
Target:  5'- -aCGaGGAGAcCGCCgCUGGucugguagACCUCGACg -3'
miRNA:   3'- agGC-CCUCUaGCGG-GACC--------UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 59160 0.67 0.695633
Target:  5'- aCCGGGccuGGAacccgUGCCUcGuGACCCCGGCc -3'
miRNA:   3'- aGGCCC---UCUa----GCGGGaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 38056 0.67 0.695633
Target:  5'- -gUGGGAGggCGCaa-GGACCCCGcGCg -3'
miRNA:   3'- agGCCCUCuaGCGggaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 70514 0.67 0.686254
Target:  5'- -gCGGGAcccgcgaauggGA-CGCCCc-GACCCCGACg -3'
miRNA:   3'- agGCCCU-----------CUaGCGGGacCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 85209 0.67 0.676838
Target:  5'- gCCGGGucGUCGUCCUcgcucgcccGGACCgCGAa -3'
miRNA:   3'- aGGCCCucUAGCGGGA---------CCUGGgGCUg -5'
8978 3' -62.2 NC_002512.2 + 42970 0.67 0.676838
Target:  5'- -aCGGGcAGGUagaCGCgCUGGuuCCCGACg -3'
miRNA:   3'- agGCCC-UCUA---GCGgGACCugGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 86124 0.68 0.610417
Target:  5'- gCgGaGGAGGUCGCggaCCUGGAagCCGACg -3'
miRNA:   3'- aGgC-CCUCUAGCG---GGACCUggGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 184008 0.68 0.66739
Target:  5'- gUCCcGGAGAugauuUCGCCCgGGGgUCCGAa -3'
miRNA:   3'- -AGGcCCUCU-----AGCGGGaCCUgGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 105114 0.68 0.66739
Target:  5'- cCCGGGAcugcgcGGUCG-UCUGGGCCgaCGACg -3'
miRNA:   3'- aGGCCCU------CUAGCgGGACCUGGg-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 220970 0.68 0.671172
Target:  5'- cCCGGccGAGGcCGCCCUGGccaggagggucgaguGCCCCaACg -3'
miRNA:   3'- aGGCC--CUCUaGCGGGACC---------------UGGGGcUG- -5'
8978 3' -62.2 NC_002512.2 + 5360 0.68 0.610417
Target:  5'- cCCGGGAccuguGGUCcuccgGCUCUGGcGCaCCCGACa -3'
miRNA:   3'- aGGCCCU-----CUAG-----CGGGACC-UG-GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 121874 0.68 0.619913
Target:  5'- aUCCgaggGGGAGGUCGCgggGGACgCUCGGCg -3'
miRNA:   3'- -AGG----CCCUCUAGCGggaCCUG-GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 106461 0.68 0.629418
Target:  5'- gUCGGGGGAUCGCgaacaCgaacgGGGCCagggCCGACg -3'
miRNA:   3'- aGGCCCUCUAGCGg----Ga----CCUGG----GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 127653 0.68 0.629418
Target:  5'- cCCGGGucggacAGAgCGCCgaGGACCUCGuCg -3'
miRNA:   3'- aGGCCC------UCUaGCGGgaCCUGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 71413 0.68 0.638924
Target:  5'- cCCGcGGAGAUCGUgCUGaGGCugcgCUCGACg -3'
miRNA:   3'- aGGC-CCUCUAGCGgGAC-CUG----GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 8365 0.68 0.648426
Target:  5'- -gCGGGAG--CGCCgaGGAUCCgCGGCg -3'
miRNA:   3'- agGCCCUCuaGCGGgaCCUGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 37309 0.68 0.657917
Target:  5'- -gCGGGAcGGUcCGCUCcGaGGCCCCGGCc -3'
miRNA:   3'- agGCCCU-CUA-GCGGGaC-CUGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.