miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 134433 0.69 0.582034
Target:  5'- cCCaGGGGGuuccUCGCCCUGG-CCUucaaCGACg -3'
miRNA:   3'- aGG-CCCUCu---AGCGGGACCuGGG----GCUG- -5'
8978 3' -62.2 NC_002512.2 + 185865 0.69 0.582034
Target:  5'- gUCGaGGAGggCGCCUcGGGCCgCUGGCa -3'
miRNA:   3'- aGGC-CCUCuaGCGGGaCCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 117086 0.69 0.582034
Target:  5'- -gCuGGAGGUgcgggcCGCCCUGGA-CCCGGCa -3'
miRNA:   3'- agGcCCUCUA------GCGGGACCUgGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 158002 0.69 0.582034
Target:  5'- aCCGGGAGGaguucgaCGCCCUGGuccgguuccUCCUGGCc -3'
miRNA:   3'- aGGCCCUCUa------GCGGGACCu--------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 227355 0.69 0.582034
Target:  5'- -aCGGGAcggaGGagGCCCgGGGCCgCCGGCg -3'
miRNA:   3'- agGCCCU----CUagCGGGaCCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 134203 0.69 0.582034
Target:  5'- -gCGGGAGAUCGaCCUGaaGGCCCCcuACa -3'
miRNA:   3'- agGCCCUCUAGCgGGAC--CUGGGGc-UG- -5'
8978 3' -62.2 NC_002512.2 + 183684 0.69 0.591471
Target:  5'- cCCGaaaGAGcUCuaCCUGGACCUCGACg -3'
miRNA:   3'- aGGCc--CUCuAGcgGGACCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 134003 0.69 0.591471
Target:  5'- gCCGGGcgaccucgAGAUCcucggcgcgcgGCCCUGGGaggacgccgcCCCCGGCc -3'
miRNA:   3'- aGGCCC--------UCUAG-----------CGGGACCU----------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 183211 0.69 0.591471
Target:  5'- -gCGGGAGAUCGacgggaucgacCCCgaGGACCCCu-- -3'
miRNA:   3'- agGCCCUCUAGC-----------GGGa-CCUGGGGcug -5'
8978 3' -62.2 NC_002512.2 + 47565 0.69 0.598093
Target:  5'- -gCGGGAGGcgagcuucaagaucUCGUCCcGGuCCCUGACg -3'
miRNA:   3'- agGCCCUCU--------------AGCGGGaCCuGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 102618 0.69 0.599987
Target:  5'- gUCCGuGGAG-UCGCacagcacCCggagcaGGACCCCGAUg -3'
miRNA:   3'- -AGGC-CCUCuAGCG-------GGa-----CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 216301 0.69 0.600934
Target:  5'- cCCGGGgacguGGGUCaccuGCaUCUGcGGCCCCGACg -3'
miRNA:   3'- aGGCCC-----UCUAG----CG-GGAC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 192814 0.69 0.600934
Target:  5'- cCCGGGGcGAUCGCaCCgGGGCCaggugGACg -3'
miRNA:   3'- aGGCCCU-CUAGCG-GGaCCUGGgg---CUG- -5'
8978 3' -62.2 NC_002512.2 + 118351 0.69 0.600934
Target:  5'- cCCGGGAGAucUCGCUCUacgugacagGGcgcuACCgCCGGCg -3'
miRNA:   3'- aGGCCCUCU--AGCGGGA---------CC----UGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 126558 0.69 0.600934
Target:  5'- cCCGGGcuacgcCGCCC-GGGCCUCGGCc -3'
miRNA:   3'- aGGCCCucua--GCGGGaCCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 224020 0.69 0.600934
Target:  5'- gUCGGacGA-CGCCCgGGACUCCGACg -3'
miRNA:   3'- aGGCCcuCUaGCGGGaCCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 223737 0.68 0.610416
Target:  5'- aCCGGGAGAcCGUCgUGGAggucgugUCCGACg -3'
miRNA:   3'- aGGCCCUCUaGCGGgACCUg------GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 222613 0.68 0.610416
Target:  5'- cCCGGGGccucgCGCCC--GAUCCCGACg -3'
miRNA:   3'- aGGCCCUcua--GCGGGacCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 146184 0.68 0.610416
Target:  5'- -gCGGcacGGUCGCCCUGGGCUCgaCGACc -3'
miRNA:   3'- agGCCcu-CUAGCGGGACCUGGG--GCUG- -5'
8978 3' -62.2 NC_002512.2 + 96291 0.68 0.610416
Target:  5'- gUCCGcaGGAGGcCgGCCCgcucgGGuCCCCGGCg -3'
miRNA:   3'- -AGGC--CCUCUaG-CGGGa----CCuGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.