miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 103627 0.7 0.517126
Target:  5'- aCCGcuGGAGGUCGgCUUcGGACaCCCGGCc -3'
miRNA:   3'- aGGC--CCUCUAGCgGGA-CCUG-GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 104464 0.67 0.723462
Target:  5'- cUCgCGGGuGGugucgucguUCGCCCUcGGGCCCgGGg -3'
miRNA:   3'- -AG-GCCCuCU---------AGCGGGA-CCUGGGgCUg -5'
8978 3' -62.2 NC_002512.2 + 104958 0.67 0.686254
Target:  5'- gUCGGGAGAUCGaCgCCgGGuccGCCUCGAg -3'
miRNA:   3'- aGGCCCUCUAGC-G-GGaCC---UGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 105114 0.68 0.66739
Target:  5'- cCCGGGAcugcgcGGUCG-UCUGGGCCgaCGACg -3'
miRNA:   3'- aGGCCCU------CUAGCgGGACCUGGg-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 105513 0.7 0.508075
Target:  5'- -aCGGGGGGcUCuggCUGGACCCCGGCg -3'
miRNA:   3'- agGCCCUCU-AGcggGACCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 106389 0.7 0.524414
Target:  5'- aCCGGGGGccgagcaccCCCUGGACCCgCGAg -3'
miRNA:   3'- aGGCCCUCuagc-----GGGACCUGGG-GCUg -5'
8978 3' -62.2 NC_002512.2 + 106461 0.68 0.629418
Target:  5'- gUCGGGGGAUCGCgaacaCgaacgGGGCCagggCCGACg -3'
miRNA:   3'- aGGCCCUCUAGCGg----Ga----CCUGG----GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 106714 0.73 0.359525
Target:  5'- cUCCGGGAuGAccgCGCuCCUGuccgccuccucGGCCCCGGCg -3'
miRNA:   3'- -AGGCCCU-CUa--GCG-GGAC-----------CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 107894 0.71 0.481339
Target:  5'- cUCCGGGcgccgauaaAGGcUUGCCCguccucGGAUCCCGACc -3'
miRNA:   3'- -AGGCCC---------UCU-AGCGGGa-----CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 108510 0.66 0.777092
Target:  5'- gCCGGGcccggCGCCCgaccggccggGGACCCgaCGGCg -3'
miRNA:   3'- aGGCCCucua-GCGGGa---------CCUGGG--GCUG- -5'
8978 3' -62.2 NC_002512.2 + 108701 0.71 0.476074
Target:  5'- cUCCaGGGugucgucgucguccgAGAacgccUCGCCCUGGGCCgCGGCc -3'
miRNA:   3'- -AGG-CCC---------------UCU-----AGCGGGACCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 109010 0.71 0.463902
Target:  5'- gCCGGcGGcGUCGUCCUgcGGACCCgCGGCg -3'
miRNA:   3'- aGGCC-CUcUAGCGGGA--CCUGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 112138 0.7 0.49909
Target:  5'- aUCGGGaAGAUCuggaacagGUCCUGGACCCUcGCa -3'
miRNA:   3'- aGGCCC-UCUAG--------CGGGACCUGGGGcUG- -5'
8978 3' -62.2 NC_002512.2 + 112475 0.67 0.686254
Target:  5'- cUCGGaGcGGAUgaCGCCCUGGuCCUCGAUg -3'
miRNA:   3'- aGGCC-C-UCUA--GCGGGACCuGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 112987 0.69 0.563258
Target:  5'- gUCCGaGGAGccCGCCCcGG-CCCCGcCg -3'
miRNA:   3'- -AGGC-CCUCuaGCGGGaCCuGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 116358 0.72 0.408846
Target:  5'- aCCGGGAGAcggggagggucaugcUgGCCCUGcGGuCCCCGGg -3'
miRNA:   3'- aGGCCCUCU---------------AgCGGGAC-CU-GGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 116950 0.66 0.750682
Target:  5'- gUCCGcGGGcucGcgCGCCaCcGGGCCgCCGACg -3'
miRNA:   3'- -AGGC-CCU---CuaGCGG-GaCCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 117086 0.69 0.582034
Target:  5'- -gCuGGAGGUgcgggcCGCCCUGGA-CCCGGCa -3'
miRNA:   3'- agGcCCUCUA------GCGGGACCUgGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 118351 0.69 0.600934
Target:  5'- cCCGGGAGAucUCGCUCUacgugacagGGcgcuACCgCCGGCg -3'
miRNA:   3'- aGGCCCUCU--AGCGGGA---------CC----UGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 121423 0.67 0.714243
Target:  5'- --aGGGAGA-CGCCCgcggagucGGCCCCGGa -3'
miRNA:   3'- aggCCCUCUaGCGGGac------CUGGGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.