miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 183211 0.69 0.591471
Target:  5'- -gCGGGAGAUCGacgggaucgacCCCgaGGACCCCu-- -3'
miRNA:   3'- agGCCCUCUAGC-----------GGGa-CCUGGGGcug -5'
8978 3' -62.2 NC_002512.2 + 213811 0.67 0.714243
Target:  5'- cCCGGGAGGguuCCCUGGACgagaguCUCGAg -3'
miRNA:   3'- aGGCCCUCUagcGGGACCUG------GGGCUg -5'
8978 3' -62.2 NC_002512.2 + 220970 0.68 0.671172
Target:  5'- cCCGGccGAGGcCGCCCUGGccaggagggucgaguGCCCCaACg -3'
miRNA:   3'- aGGCC--CUCUaGCGGGACC---------------UGGGGcUG- -5'
8978 3' -62.2 NC_002512.2 + 134157 0.68 0.657917
Target:  5'- -aCGGGuacccGUCGaCCC-GGACCCUGGCg -3'
miRNA:   3'- agGCCCuc---UAGC-GGGaCCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 129578 0.68 0.629417
Target:  5'- gCCGGGAcGUCgGCCCcgucGcCCCCGACg -3'
miRNA:   3'- aGGCCCUcUAG-CGGGac--CuGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 196436 0.66 0.728961
Target:  5'- gUCGGGAGAggUCGgggccauggaauaCCUGGGCUgCGGCg -3'
miRNA:   3'- aGGCCCUCU--AGCg------------GGACCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 217522 0.67 0.704964
Target:  5'- cUCGGGGGGUCGCgguucaCCUGGuugaaCCgGGCg -3'
miRNA:   3'- aGGCCCUCUAGCG------GGACCug---GGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 112475 0.67 0.686254
Target:  5'- cUCGGaGcGGAUgaCGCCCUGGuCCUCGAUg -3'
miRNA:   3'- aGGCC-C-UCUA--GCGGGACCuGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 92728 0.67 0.676838
Target:  5'- gUCCGGGGGGcgCGCUCgguccgauGGCgCCGACg -3'
miRNA:   3'- -AGGCCCUCUa-GCGGGac------CUGgGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 74498 0.67 0.704033
Target:  5'- cUCCGc--GAUCGCCCgccGGcgccgccGCCCCGACc -3'
miRNA:   3'- -AGGCccuCUAGCGGGa--CC-------UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 189502 0.66 0.750681
Target:  5'- aCCGccagguGGAGA-CGCUCcGGGCCCgGGCu -3'
miRNA:   3'- aGGC------CCUCUaGCGGGaCCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 143590 0.66 0.74889
Target:  5'- --aGGGAGG-CGCCCUugcgugcGGGCCCCcgucuccGGCg -3'
miRNA:   3'- aggCCCUCUaGCGGGA-------CCUGGGG-------CUG- -5'
8978 3' -62.2 NC_002512.2 + 134203 0.69 0.582034
Target:  5'- -gCGGGAGAUCGaCCUGaaGGCCCCcuACa -3'
miRNA:   3'- agGCCCUCUAGCgGGAC--CUGGGGc-UG- -5'
8978 3' -62.2 NC_002512.2 + 224621 0.7 0.544648
Target:  5'- aCCGGGcucgGGGUCGCCgCcGcGGCCUCGGCc -3'
miRNA:   3'- aGGCCC----UCUAGCGG-GaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 226473 0.71 0.490177
Target:  5'- -gCGGGAGGagGCCg-GGGCCCgGGCg -3'
miRNA:   3'- agGCCCUCUagCGGgaCCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 107894 0.71 0.481339
Target:  5'- cUCCGGGcgccgauaaAGGcUUGCCCguccucGGAUCCCGACc -3'
miRNA:   3'- -AGGCCC---------UCU-AGCGGGa-----CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 106389 0.7 0.524414
Target:  5'- aCCGGGGGccgagcaccCCCUGGACCCgCGAg -3'
miRNA:   3'- aGGCCCUCuagc-----GGGACCUGGG-GCUg -5'
8978 3' -62.2 NC_002512.2 + 183684 0.69 0.591471
Target:  5'- cCCGaaaGAGcUCuaCCUGGACCUCGACg -3'
miRNA:   3'- aGGCc--CUCuAGcgGGACCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 223050 0.69 0.563258
Target:  5'- gUCCGGGAGGUgC-CCCUGGucGCCaCCGu- -3'
miRNA:   3'- -AGGCCCUCUA-GcGGGACC--UGG-GGCug -5'
8978 3' -62.2 NC_002512.2 + 158614 0.69 0.563258
Target:  5'- cCCGGGuccuGGcgGCCCUGGacgGCUCCGACc -3'
miRNA:   3'- aGGCCCu---CUagCGGGACC---UGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.