miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 5' -55.5 NC_002512.2 + 15289 0.67 0.948331
Target:  5'- -aGUCGGGCUgCAGgaagaGCGUCUCgUCGCc -3'
miRNA:   3'- ugUAGCUCGGgGUCa----UGUAGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 25217 0.67 0.948331
Target:  5'- aGCGggagCGAGCCgCCGGcg-AUCcCCCGCg -3'
miRNA:   3'- -UGUa---GCUCGG-GGUCaugUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 213519 0.67 0.946651
Target:  5'- gGCGUCGuccgggucgggguGCCCuCGGaGCGUCUgCUGCg -3'
miRNA:   3'- -UGUAGCu------------CGGG-GUCaUGUAGAgGGCG- -5'
8978 5' -55.5 NC_002512.2 + 109403 0.67 0.944064
Target:  5'- gGCGUCGu-CCCCA--GCGUCUCCucuuCGCg -3'
miRNA:   3'- -UGUAGCucGGGGUcaUGUAGAGG----GCG- -5'
8978 5' -55.5 NC_002512.2 + 29593 0.67 0.944064
Target:  5'- gGCGgaCGAGCCCCAGUccgACggCUCgUCGUc -3'
miRNA:   3'- -UGUa-GCUCGGGGUCA---UGuaGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 169064 0.67 0.944064
Target:  5'- cGCGagGGGCUCCGcGgcggcgGCGUCgcggCCCGCg -3'
miRNA:   3'- -UGUagCUCGGGGU-Ca-----UGUAGa---GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 29387 0.67 0.939573
Target:  5'- ---aCGAGCCCCGGUcggaggacGCcgCcCUCGCa -3'
miRNA:   3'- uguaGCUCGGGGUCA--------UGuaGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 80719 0.67 0.939573
Target:  5'- gGCGcgCGGGCCCgCGGgcgGCAcCggcCCCGCg -3'
miRNA:   3'- -UGUa-GCUCGGG-GUCa--UGUaGa--GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 40370 0.67 0.939573
Target:  5'- cGCggCGAGCCCgGGcccggaGCGUCUCCaccugGCg -3'
miRNA:   3'- -UGuaGCUCGGGgUCa-----UGUAGAGGg----CG- -5'
8978 5' -55.5 NC_002512.2 + 109814 0.67 0.934857
Target:  5'- uACAUCGA-CCCCGcGUucACGUCgaaCCGCc -3'
miRNA:   3'- -UGUAGCUcGGGGU-CA--UGUAGag-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 136824 0.67 0.934857
Target:  5'- cACGaCGAcGCCCCGcgGCGUCgUCUCGCu -3'
miRNA:   3'- -UGUaGCU-CGGGGUcaUGUAG-AGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 82810 0.67 0.934857
Target:  5'- aGCAgCG-GCUCCAGaGCGUCgcccaacguUCCCGCc -3'
miRNA:   3'- -UGUaGCuCGGGGUCaUGUAG---------AGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 129287 0.67 0.934857
Target:  5'- uGCGUCGAGCCgCGGgcGCgGUUUCCC-Ca -3'
miRNA:   3'- -UGUAGCUCGGgGUCa-UG-UAGAGGGcG- -5'
8978 5' -55.5 NC_002512.2 + 111467 0.67 0.929913
Target:  5'- gACGUCGcccGGCCCuuCAGUugGcUCUCCaGCa -3'
miRNA:   3'- -UGUAGC---UCGGG--GUCAugU-AGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 31874 0.67 0.929913
Target:  5'- cGCGUCccucGCCCCcGUcCGUCgCCCGCu -3'
miRNA:   3'- -UGUAGcu--CGGGGuCAuGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 219042 0.67 0.929913
Target:  5'- uACGUCGucGGCCgCGGcGCGgggCUCcCCGCg -3'
miRNA:   3'- -UGUAGC--UCGGgGUCaUGUa--GAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 109188 0.68 0.924743
Target:  5'- ----aGAGCCCCAgGUGCg---CCCGCu -3'
miRNA:   3'- uguagCUCGGGGU-CAUGuagaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 25106 0.68 0.924743
Target:  5'- gGCGUCuccuucCCCCGGU-CGUC-CCCGCg -3'
miRNA:   3'- -UGUAGcuc---GGGGUCAuGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 96950 0.68 0.924743
Target:  5'- gGCGUCGcGCCgaCCGucGUccGCGUCUUCCGCc -3'
miRNA:   3'- -UGUAGCuCGG--GGU--CA--UGUAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 79886 0.68 0.924743
Target:  5'- ----aGAGCCCCGGcgugggUUCCCGCg -3'
miRNA:   3'- uguagCUCGGGGUCaugua-GAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.