miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 3' -58 NC_002512.2 + 193112 0.66 0.908496
Target:  5'- ----cGCGCCGgagagCUGCGuCCgGCCCGa -3'
miRNA:   3'- cuaccUGCGGCa----GAUGCuGGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 218626 0.66 0.908496
Target:  5'- --aGGACGCgCGUCgg-GACCcugucgcGCCCGg -3'
miRNA:   3'- cuaCCUGCG-GCAGaugCUGGa------CGGGC- -5'
8980 3' -58 NC_002512.2 + 225610 0.66 0.914204
Target:  5'- -cUGGcCGUCGUCguccgguccgACGACCUGuauccCCCGa -3'
miRNA:   3'- cuACCuGCGGCAGa---------UGCUGGAC-----GGGC- -5'
8980 3' -58 NC_002512.2 + 128280 0.66 0.914204
Target:  5'- ---cGGCGCCGggccgACGGCC-GCCCGc -3'
miRNA:   3'- cuacCUGCGGCaga--UGCUGGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 65448 0.67 0.883536
Target:  5'- --aGGGCGCCGagcggCUucccgGCGACCUGCauGg -3'
miRNA:   3'- cuaCCUGCGGCa----GA-----UGCUGGACGggC- -5'
8980 3' -58 NC_002512.2 + 124226 0.67 0.862671
Target:  5'- ----cGCGCCGUCUgcuGCGGCUcGCCCu -3'
miRNA:   3'- cuaccUGCGGCAGA---UGCUGGaCGGGc -5'
8980 3' -58 NC_002512.2 + 95752 0.67 0.890089
Target:  5'- --gGGACGCgCGcCgcgACGGCC-GCCUGg -3'
miRNA:   3'- cuaCCUGCG-GCaGa--UGCUGGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 146722 0.67 0.890089
Target:  5'- gGcgGGGCGgCGgCcGCGGCCgccggGCCCGa -3'
miRNA:   3'- -CuaCCUGCgGCaGaUGCUGGa----CGGGC- -5'
8980 3' -58 NC_002512.2 + 43213 0.67 0.862671
Target:  5'- --cGGACGCCGUaucgcacgACGuCCU-CCCGg -3'
miRNA:   3'- cuaCCUGCGGCAga------UGCuGGAcGGGC- -5'
8980 3' -58 NC_002512.2 + 44793 0.67 0.863395
Target:  5'- -cUGaACGCCGUCUugacguagaaGCGGCCgagcucccggucgagGCCCGg -3'
miRNA:   3'- cuACcUGCGGCAGA----------UGCUGGa--------------CGGGC- -5'
8980 3' -58 NC_002512.2 + 114153 0.67 0.869822
Target:  5'- uGGUGGgcaGCGUCGUCU-CGGCC-GCCUc -3'
miRNA:   3'- -CUACC---UGCGGCAGAuGCUGGaCGGGc -5'
8980 3' -58 NC_002512.2 + 17431 0.67 0.883536
Target:  5'- --cGGAUGCCcuccucgcggcgGUC-GCGGCCggccgGCCCGa -3'
miRNA:   3'- cuaCCUGCGG------------CAGaUGCUGGa----CGGGC- -5'
8980 3' -58 NC_002512.2 + 102626 0.67 0.882869
Target:  5'- cGggGGaACGCCGUCgccguucCGGCCgucgccucggucgUGCCCGc -3'
miRNA:   3'- -CuaCC-UGCGGCAGau-----GCUGG-------------ACGGGC- -5'
8980 3' -58 NC_002512.2 + 130251 0.67 0.886182
Target:  5'- --cGGGCGCCGggccCUccgagggcgACGACCgcgacgagcgcgggGCCCGg -3'
miRNA:   3'- cuaCCUGCGGCa---GA---------UGCUGGa-------------CGGGC- -5'
8980 3' -58 NC_002512.2 + 91246 0.67 0.890089
Target:  5'- --gGGACGCCGcgUACGGggagaUGCCCGg -3'
miRNA:   3'- cuaCCUGCGGCagAUGCUgg---ACGGGC- -5'
8980 3' -58 NC_002512.2 + 66798 0.67 0.876779
Target:  5'- gGAUGGcGCGCUugacgACGACCUGCCa- -3'
miRNA:   3'- -CUACC-UGCGGcaga-UGCUGGACGGgc -5'
8980 3' -58 NC_002512.2 + 96737 0.67 0.876779
Target:  5'- cGAUGGcucCGCCGcCUGCuACgUGCUCGa -3'
miRNA:   3'- -CUACCu--GCGGCaGAUGcUGgACGGGC- -5'
8980 3' -58 NC_002512.2 + 72811 0.67 0.872628
Target:  5'- cGUGGGCGCCG---GCGACCccggaccccgggacGCCCGc -3'
miRNA:   3'- cUACCUGCGGCagaUGCUGGa-------------CGGGC- -5'
8980 3' -58 NC_002512.2 + 129100 0.67 0.869822
Target:  5'- --cGGGCGgCGUCUGCGGCgggcgGUCCu -3'
miRNA:   3'- cuaCCUGCgGCAGAUGCUGga---CGGGc -5'
8980 3' -58 NC_002512.2 + 225150 0.67 0.883536
Target:  5'- -----cCGCCGUCgACGACgcaUGCCCGg -3'
miRNA:   3'- cuaccuGCGGCAGaUGCUGg--ACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.