miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 3' -58 NC_002512.2 + 225610 0.66 0.914204
Target:  5'- -cUGGcCGUCGUCguccgguccgACGACCUGuauccCCCGa -3'
miRNA:   3'- cuACCuGCGGCAGa---------UGCUGGAC-----GGGC- -5'
8980 3' -58 NC_002512.2 + 128280 0.66 0.914204
Target:  5'- ---cGGCGCCGggccgACGGCC-GCCCGc -3'
miRNA:   3'- cuacCUGCGGCaga--UGCUGGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 123827 0.66 0.914204
Target:  5'- ---aGGCGCUGUCgcACGAUCUgcGCCCGc -3'
miRNA:   3'- cuacCUGCGGCAGa-UGCUGGA--CGGGC- -5'
8980 3' -58 NC_002512.2 + 123110 0.66 0.914204
Target:  5'- --cGGAaccgucccgcCGCCGUCgGCGGCC-GuCCCGg -3'
miRNA:   3'- cuaCCU----------GCGGCAGaUGCUGGaC-GGGC- -5'
8980 3' -58 NC_002512.2 + 107873 0.66 0.914204
Target:  5'- cGUGGAgGCCGUCgucaccuUGGCC-GCCgCGa -3'
miRNA:   3'- cUACCUgCGGCAGau-----GCUGGaCGG-GC- -5'
8980 3' -58 NC_002512.2 + 134873 0.66 0.914204
Target:  5'- --gGcGACGCCGUCgGgGACCuggacUGCUCGg -3'
miRNA:   3'- cuaC-CUGCGGCAGaUgCUGG-----ACGGGC- -5'
8980 3' -58 NC_002512.2 + 31718 0.66 0.908496
Target:  5'- cGUGGAggucCGCCGgccggCgcCGACCcgGCCCGc -3'
miRNA:   3'- cUACCU----GCGGCa----GauGCUGGa-CGGGC- -5'
8980 3' -58 NC_002512.2 + 193112 0.66 0.908496
Target:  5'- ----cGCGCCGgagagCUGCGuCCgGCCCGa -3'
miRNA:   3'- cuaccUGCGGCa----GAUGCuGGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 213242 0.66 0.908496
Target:  5'- ---cGGCGCCGgccggaucugcgUCUACGACaugggGCCCGu -3'
miRNA:   3'- cuacCUGCGGC------------AGAUGCUGga---CGGGC- -5'
8980 3' -58 NC_002512.2 + 218626 0.66 0.908496
Target:  5'- --aGGACGCgCGUCgg-GACCcugucgcGCCCGg -3'
miRNA:   3'- cuaCCUGCG-GCAGaugCUGGa------CGGGC- -5'
8980 3' -58 NC_002512.2 + 31136 0.66 0.908496
Target:  5'- --cGaGACgaagGCCGUCUucGCgGACCUGgCCCGg -3'
miRNA:   3'- cuaC-CUG----CGGCAGA--UG-CUGGAC-GGGC- -5'
8980 3' -58 NC_002512.2 + 3157 0.66 0.908496
Target:  5'- --cGGuccCGCCGUCgucgcccGCGGCCU-CCCGu -3'
miRNA:   3'- cuaCCu--GCGGCAGa------UGCUGGAcGGGC- -5'
8980 3' -58 NC_002512.2 + 108690 0.66 0.908496
Target:  5'- --aGGGCGCUGU---CGGCCagcGCCCGg -3'
miRNA:   3'- cuaCCUGCGGCAgauGCUGGa--CGGGC- -5'
8980 3' -58 NC_002512.2 + 211342 0.66 0.902572
Target:  5'- --cGGGCGCUGggggacgCgcGCGGCCUgaccGCCCGg -3'
miRNA:   3'- cuaCCUGCGGCa------Ga-UGCUGGA----CGGGC- -5'
8980 3' -58 NC_002512.2 + 123863 0.66 0.902572
Target:  5'- --aGGACGCCGcacccccgGCGGCgCcGCCCGu -3'
miRNA:   3'- cuaCCUGCGGCaga-----UGCUG-GaCGGGC- -5'
8980 3' -58 NC_002512.2 + 208423 0.66 0.902572
Target:  5'- --cGGGCGCCGcUCccgGCG-CCgGCCCc -3'
miRNA:   3'- cuaCCUGCGGC-AGa--UGCuGGaCGGGc -5'
8980 3' -58 NC_002512.2 + 88885 0.66 0.902572
Target:  5'- --cGGuCGCCGUCcuucGCGAUCgcgGUCCGu -3'
miRNA:   3'- cuaCCuGCGGCAGa---UGCUGGa--CGGGC- -5'
8980 3' -58 NC_002512.2 + 115936 0.66 0.902572
Target:  5'- ----cACGCaCGUCUuccGCGGCCUGCUCu -3'
miRNA:   3'- cuaccUGCG-GCAGA---UGCUGGACGGGc -5'
8980 3' -58 NC_002512.2 + 193180 0.66 0.898916
Target:  5'- cGAUGGuCGCCuucuucuucgaccgcGUCUuCGGCUcgccguUGCCCGg -3'
miRNA:   3'- -CUACCuGCGG---------------CAGAuGCUGG------ACGGGC- -5'
8980 3' -58 NC_002512.2 + 3193 0.66 0.896436
Target:  5'- ---cGACGCCGcCgcggGCGACg-GCCCGg -3'
miRNA:   3'- cuacCUGCGGCaGa---UGCUGgaCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.