miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 3' -52.2 NC_002512.2 + 194577 1.09 0.009997
Target:  5'- gCCCCUCAAGGUCAACCGCUACAUGAAg -3'
miRNA:   3'- -GGGGAGUUCCAGUUGGCGAUGUACUU- -5'
8981 3' -52.2 NC_002512.2 + 225847 0.75 0.740708
Target:  5'- cCCCUUCucGGGUgGACCGUagUACAUGAAc -3'
miRNA:   3'- -GGGGAGu-UCCAgUUGGCG--AUGUACUU- -5'
8981 3' -52.2 NC_002512.2 + 144602 0.73 0.823896
Target:  5'- uCCCCUCGcacgAGGUCcgcGCCGCgcuggACGUGGc -3'
miRNA:   3'- -GGGGAGU----UCCAGu--UGGCGa----UGUACUu -5'
8981 3' -52.2 NC_002512.2 + 60335 0.73 0.840661
Target:  5'- aCCCUCGuAGGUCAGCCcccucccaUACAUGAc -3'
miRNA:   3'- gGGGAGU-UCCAGUUGGcg------AUGUACUu -5'
8981 3' -52.2 NC_002512.2 + 186934 0.73 0.840661
Target:  5'- gCCCgu--GGUCAACCGCUACcUGGc -3'
miRNA:   3'- gGGGaguuCCAGUUGGCGAUGuACUu -5'
8981 3' -52.2 NC_002512.2 + 98614 0.71 0.899531
Target:  5'- gCCgUCgAAGGUCAAcCCGCUGC-UGGAg -3'
miRNA:   3'- gGGgAG-UUCCAGUU-GGCGAUGuACUU- -5'
8981 3' -52.2 NC_002512.2 + 139459 0.71 0.905878
Target:  5'- aCCgUCGA-GUCGACCGCUACuAUGGc -3'
miRNA:   3'- gGGgAGUUcCAGUUGGCGAUG-UACUu -5'
8981 3' -52.2 NC_002512.2 + 213154 0.71 0.905878
Target:  5'- aCCCgCUCAuggcGGGUCAGCU-CUGCGUGGu -3'
miRNA:   3'- -GGG-GAGU----UCCAGUUGGcGAUGUACUu -5'
8981 3' -52.2 NC_002512.2 + 4317 0.71 0.923484
Target:  5'- gCCCCUCGAGGUCGGCCucGUcGCc-GAAg -3'
miRNA:   3'- -GGGGAGUUCCAGUUGG--CGaUGuaCUU- -5'
8981 3' -52.2 NC_002512.2 + 114568 0.7 0.937471
Target:  5'- gCCCaUCAGGGUCAgcagggucuggaucACCGuCUGCGUGc- -3'
miRNA:   3'- gGGG-AGUUCCAGU--------------UGGC-GAUGUACuu -5'
8981 3' -52.2 NC_002512.2 + 8303 0.7 0.938916
Target:  5'- cCCCCUCcGGGUCGACggaGCaggGCcgGGAg -3'
miRNA:   3'- -GGGGAGuUCCAGUUGg--CGa--UGuaCUU- -5'
8981 3' -52.2 NC_002512.2 + 33717 0.69 0.952189
Target:  5'- cCCCCUCGGGcucgccccucGUCGACCGgaGCGaGGAg -3'
miRNA:   3'- -GGGGAGUUC----------CAGUUGGCgaUGUaCUU- -5'
8981 3' -52.2 NC_002512.2 + 79466 0.69 0.956144
Target:  5'- uCCCgUCGGGG-CGACCGCgcgccCGUGGg -3'
miRNA:   3'- -GGGgAGUUCCaGUUGGCGau---GUACUu -5'
8981 3' -52.2 NC_002512.2 + 178025 0.68 0.969128
Target:  5'- gCCCCUgGAGGUCuauaaaacaucCCGCgUAUGUGAGu -3'
miRNA:   3'- -GGGGAgUUCCAGuu---------GGCG-AUGUACUU- -5'
8981 3' -52.2 NC_002512.2 + 128740 0.68 0.969428
Target:  5'- cCCCCuucuggcUCAAGGUCuacGACgCGCUGCGcGAGc -3'
miRNA:   3'- -GGGG-------AGUUCCAG---UUG-GCGAUGUaCUU- -5'
8981 3' -52.2 NC_002512.2 + 213022 0.68 0.969725
Target:  5'- cCCUCUCGAGGUgCGuccGCCgGCUGCGgggGAu -3'
miRNA:   3'- -GGGGAGUUCCA-GU---UGG-CGAUGUa--CUu -5'
8981 3' -52.2 NC_002512.2 + 132151 0.68 0.979999
Target:  5'- gCCaCCUCGAGGUCGgugAgCGCggcguCGUGAGc -3'
miRNA:   3'- -GG-GGAGUUCCAGU---UgGCGau---GUACUU- -5'
8981 3' -52.2 NC_002512.2 + 220002 0.67 0.985804
Target:  5'- cCCCCUCGcccggcGGGUCGagagGCCGCUcCGUc-- -3'
miRNA:   3'- -GGGGAGU------UCCAGU----UGGCGAuGUAcuu -5'
8981 3' -52.2 NC_002512.2 + 100809 0.67 0.990222
Target:  5'- gUCCUCGGGGUCGACCuggacgaggauGUUcaucgGCGUGAc -3'
miRNA:   3'- gGGGAGUUCCAGUUGG-----------CGA-----UGUACUu -5'
8981 3' -52.2 NC_002512.2 + 96587 0.66 0.991312
Target:  5'- cCCgCCUCGGGGUCcucugggGACCGgaGCGcGGAg -3'
miRNA:   3'- -GG-GGAGUUCCAG-------UUGGCgaUGUaCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.