miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 3' -51.3 NC_002512.2 + 144474 0.78 0.678933
Target:  5'- gGCGUcCAACCgCGugGAGUUCGUCc- -3'
miRNA:   3'- aUGCA-GUUGGaGCugCUCAAGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 142212 0.67 0.99704
Target:  5'- -cCGUCggUCUCGACG---UCGUCGc -3'
miRNA:   3'- auGCAGuuGGAGCUGCucaAGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 141211 0.7 0.970892
Target:  5'- aGCG-CAGCCggGGCGGGUUCGggCGGu -3'
miRNA:   3'- aUGCaGUUGGagCUGCUCAAGCa-GCU- -5'
8982 3' -51.3 NC_002512.2 + 140853 0.74 0.876258
Target:  5'- gACGagAuCCUCGugGAGUUCGcUCGGa -3'
miRNA:   3'- aUGCagUuGGAGCugCUCAAGC-AGCU- -5'
8982 3' -51.3 NC_002512.2 + 137800 0.69 0.982787
Target:  5'- cACGagAugCUCGACGAGaacugCGUCGu -3'
miRNA:   3'- aUGCagUugGAGCUGCUCaa---GCAGCu -5'
8982 3' -51.3 NC_002512.2 + 137539 0.72 0.941212
Target:  5'- cGCGUCcGCggCGACGGGUUCGgucgCGGa -3'
miRNA:   3'- aUGCAGuUGgaGCUGCUCAAGCa---GCU- -5'
8982 3' -51.3 NC_002512.2 + 137326 0.66 0.997876
Target:  5'- gGCGUCGgcGCCUcCGACG---UCGUCGc -3'
miRNA:   3'- aUGCAGU--UGGA-GCUGCucaAGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 135333 0.68 0.992583
Target:  5'- gGCGUCAGCCgCGcCGGGgugcugcuggcCGUCGAc -3'
miRNA:   3'- aUGCAGUUGGaGCuGCUCaa---------GCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 134143 0.68 0.990585
Target:  5'- gACGaUCAACC-CgGACGGGUaccCGUCGAc -3'
miRNA:   3'- aUGC-AGUUGGaG-CUGCUCAa--GCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 132010 0.67 0.99653
Target:  5'- gGCGcCGgggggACCUCGGCGGcgacgUCGUCGGc -3'
miRNA:   3'- aUGCaGU-----UGGAGCUGCUca---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 130548 0.67 0.99455
Target:  5'- -cCGUCcggauGCUcgUCGAgGAGUUCGUCGu -3'
miRNA:   3'- auGCAGu----UGG--AGCUgCUCAAGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 126475 0.7 0.970892
Target:  5'- gACGgCGuCUUCGACGAGUUCGUgGc -3'
miRNA:   3'- aUGCaGUuGGAGCUGCUCAAGCAgCu -5'
8982 3' -51.3 NC_002512.2 + 124742 0.67 0.99595
Target:  5'- gAC-UCGGCCuguUCGugGAGccgUCGUCGGc -3'
miRNA:   3'- aUGcAGUUGG---AGCugCUCa--AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 123020 0.7 0.973644
Target:  5'- cUGC-UCGugCgCGACGAGgaggUCGUCGAg -3'
miRNA:   3'- -AUGcAGUugGaGCUGCUCa---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 121519 0.67 0.99455
Target:  5'- aACGUCAuCCUCGGgGAGcUCcggcgcgccgggGUCGAg -3'
miRNA:   3'- aUGCAGUuGGAGCUgCUCaAG------------CAGCU- -5'
8982 3' -51.3 NC_002512.2 + 115365 0.72 0.936481
Target:  5'- gUGCGUCAGCaggUCGACcGGgaCGUCGAu -3'
miRNA:   3'- -AUGCAGUUGg--AGCUGcUCaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 112494 0.66 0.997876
Target:  5'- gUGCGcgCAGCC-CGACGAGUagaUCGAg -3'
miRNA:   3'- -AUGCa-GUUGGaGCUGCUCAagcAGCU- -5'
8982 3' -51.3 NC_002512.2 + 108750 0.73 0.909276
Target:  5'- gGCGUCucggccGCCgUCGACGGGUUCGgguacCGAu -3'
miRNA:   3'- aUGCAGu-----UGG-AGCUGCUCAAGCa----GCU- -5'
8982 3' -51.3 NC_002512.2 + 106849 0.71 0.957821
Target:  5'- gUGCaGUCGAUCUCGACGAccuccUCGUCGc -3'
miRNA:   3'- -AUG-CAGUUGGAGCUGCUca---AGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 104959 0.66 0.998504
Target:  5'- gGCGcCGGCCUCGugucucucguACGGGUa-GUCGAc -3'
miRNA:   3'- aUGCaGUUGGAGC----------UGCUCAagCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.