miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 3' -51.3 NC_002512.2 + 134143 0.68 0.990585
Target:  5'- gACGaUCAACC-CgGACGGGUaccCGUCGAc -3'
miRNA:   3'- aUGC-AGUUGGaG-CUGCUCAa--GCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 88992 0.67 0.995292
Target:  5'- -uCGUCGACC-CGgagcGCGGGgaCGUCGGg -3'
miRNA:   3'- auGCAGUUGGaGC----UGCUCaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 184026 0.8 0.557289
Target:  5'- cUACGUCGACCUCGGuccgcugguCGAGUUCGUgUGAg -3'
miRNA:   3'- -AUGCAGUUGGAGCU---------GCUCAAGCA-GCU- -5'
8982 3' -51.3 NC_002512.2 + 137539 0.72 0.941212
Target:  5'- cGCGUCcGCggCGACGGGUUCGgucgCGGa -3'
miRNA:   3'- aUGCAGuUGgaGCUGCUCAAGCa---GCU- -5'
8982 3' -51.3 NC_002512.2 + 161711 0.69 0.987894
Target:  5'- gACG-CGGCCggCGACGGGaUCGUCu- -3'
miRNA:   3'- aUGCaGUUGGa-GCUGCUCaAGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 124742 0.67 0.99595
Target:  5'- gAC-UCGGCCuguUCGugGAGccgUCGUCGGc -3'
miRNA:   3'- aUGcAGUUGG---AGCugCUCa--AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 106849 0.71 0.957821
Target:  5'- gUGCaGUCGAUCUCGACGAccuccUCGUCGc -3'
miRNA:   3'- -AUG-CAGUUGGAGCUGCUca---AGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 132010 0.67 0.99653
Target:  5'- gGCGcCGgggggACCUCGGCGGcgacgUCGUCGGc -3'
miRNA:   3'- aUGCaGU-----UGGAGCUGCUca---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 171514 0.66 0.997487
Target:  5'- -cCGUCAcCCUCGAgGA---CGUCGAg -3'
miRNA:   3'- auGCAGUuGGAGCUgCUcaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 137800 0.69 0.982787
Target:  5'- cACGagAugCUCGACGAGaacugCGUCGu -3'
miRNA:   3'- aUGCagUugGAGCUGCUCaa---GCAGCu -5'
8982 3' -51.3 NC_002512.2 + 212196 0.75 0.829603
Target:  5'- aACGUCAcGCugCUCGACGAGgagaUCGUCGGc -3'
miRNA:   3'- aUGCAGU-UG--GAGCUGCUCa---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 100471 0.68 0.992171
Target:  5'- cGCGUUcucggucguggcccgGACCUUGGgGAGgccgcggUCGUCGAg -3'
miRNA:   3'- aUGCAG---------------UUGGAGCUgCUCa------AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 148764 0.68 0.993716
Target:  5'- gUGCG-CGACUUCGACGAccuGggCGUCa- -3'
miRNA:   3'- -AUGCaGUUGGAGCUGCU---CaaGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 167419 0.69 0.979473
Target:  5'- gGCGUCGAUCUCGugcggcggcacgccuGCGcGUUCGUCc- -3'
miRNA:   3'- aUGCAGUUGGAGC---------------UGCuCAAGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 35242 0.72 0.936481
Target:  5'- -cCGUCGACCUCgGACGGGUgccccgUGUCa- -3'
miRNA:   3'- auGCAGUUGGAG-CUGCUCAa-----GCAGcu -5'
8982 3' -51.3 NC_002512.2 + 194475 1.08 0.016272
Target:  5'- cUACGUCAACCUCGACGAGUUCGUCGAg -3'
miRNA:   3'- -AUGCAGUUGGAGCUGCUCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 95380 0.68 0.989305
Target:  5'- gACGUCGACgUCGGCGuGGUaCGUgacCGAg -3'
miRNA:   3'- aUGCAGUUGgAGCUGC-UCAaGCA---GCU- -5'
8982 3' -51.3 NC_002512.2 + 137326 0.66 0.997876
Target:  5'- gGCGUCGgcGCCUcCGACG---UCGUCGc -3'
miRNA:   3'- aUGCAGU--UGGA-GCUGCucaAGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 70828 0.66 0.997609
Target:  5'- cGCGUCGuccGCCUCGccccgggACGAGaugccgcggagaagUCGUCGGu -3'
miRNA:   3'- aUGCAGU---UGGAGC-------UGCUCa-------------AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 112494 0.66 0.997876
Target:  5'- gUGCGcgCAGCC-CGACGAGUagaUCGAg -3'
miRNA:   3'- -AUGCa-GUUGGaGCUGCUCAagcAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.