miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 3' -51.3 NC_002512.2 + 4237 0.67 0.99595
Target:  5'- gACGUCgAGCCcCGACGGGUgguUCGGg -3'
miRNA:   3'- aUGCAG-UUGGaGCUGCUCAagcAGCU- -5'
8982 3' -51.3 NC_002512.2 + 85950 0.67 0.99595
Target:  5'- gACGUCGucauCCugaagcucgucgUCGGCGAGUUCGcccucUCGGa -3'
miRNA:   3'- aUGCAGUu---GG------------AGCUGCUCAAGC-----AGCU- -5'
8982 3' -51.3 NC_002512.2 + 88992 0.67 0.995292
Target:  5'- -uCGUCGACC-CGgagcGCGGGgaCGUCGGg -3'
miRNA:   3'- auGCAGUUGGaGC----UGCUCaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 226386 0.67 0.995292
Target:  5'- cGCGUgGGCCUgCGACGcAGga-GUCGGc -3'
miRNA:   3'- aUGCAgUUGGA-GCUGC-UCaagCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 130548 0.67 0.99455
Target:  5'- -cCGUCcggauGCUcgUCGAgGAGUUCGUCGu -3'
miRNA:   3'- auGCAGu----UGG--AGCUgCUCAAGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 121519 0.67 0.99455
Target:  5'- aACGUCAuCCUCGGgGAGcUCcggcgcgccgggGUCGAg -3'
miRNA:   3'- aUGCAGUuGGAGCUgCUCaAG------------CAGCU- -5'
8982 3' -51.3 NC_002512.2 + 11536 0.67 0.99455
Target:  5'- aACGggaUCGACCUgGACGAGgaCGagGAg -3'
miRNA:   3'- aUGC---AGUUGGAgCUGCUCaaGCagCU- -5'
8982 3' -51.3 NC_002512.2 + 148764 0.68 0.993716
Target:  5'- gUGCG-CGACUUCGACGAccuGggCGUCa- -3'
miRNA:   3'- -AUGCaGUUGGAGCUGCU---CaaGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 100815 0.68 0.992782
Target:  5'- gGgGUCGACCUgGACGAggauGUUCaUCGGc -3'
miRNA:   3'- aUgCAGUUGGAgCUGCU----CAAGcAGCU- -5'
8982 3' -51.3 NC_002512.2 + 215072 0.68 0.992782
Target:  5'- gGCGUCuACCgcgUCGGCGGGaccgaggacUUCGUCGc -3'
miRNA:   3'- aUGCAGuUGG---AGCUGCUC---------AAGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 135333 0.68 0.992583
Target:  5'- gGCGUCAGCCgCGcCGGGgugcugcuggcCGUCGAc -3'
miRNA:   3'- aUGCAGUUGGaGCuGCUCaa---------GCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 16567 0.68 0.992481
Target:  5'- -uCGUCGggcaGCCcguaggccaggaaaUCGACGAGgUCGUCGGc -3'
miRNA:   3'- auGCAGU----UGG--------------AGCUGCUCaAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 100471 0.68 0.992171
Target:  5'- cGCGUUcucggucguggcccgGACCUUGGgGAGgccgcggUCGUCGAg -3'
miRNA:   3'- aUGCAG---------------UUGGAGCUgCUCa------AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 102148 0.68 0.991741
Target:  5'- cUACGgccgCGACCgCGGCuGGG-UCGUCGAu -3'
miRNA:   3'- -AUGCa---GUUGGaGCUG-CUCaAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 156054 0.68 0.991293
Target:  5'- -uCGUCGACacggcgaggcucaUCGACGccgggcgccggcAGUUCGUCGAg -3'
miRNA:   3'- auGCAGUUGg------------AGCUGC------------UCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 134143 0.68 0.990585
Target:  5'- gACGaUCAACC-CgGACGGGUaccCGUCGAc -3'
miRNA:   3'- aUGC-AGUUGGaG-CUGCUCAa--GCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 188117 0.68 0.990585
Target:  5'- cGCGUCGACUUCGAUuucaacgUCGUCGc -3'
miRNA:   3'- aUGCAGUUGGAGCUGcuca---AGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 156306 0.68 0.989305
Target:  5'- --aGUCGGCCgugUCGcACGGGgagcUCGUCGAg -3'
miRNA:   3'- augCAGUUGG---AGC-UGCUCa---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 103048 0.68 0.989305
Target:  5'- gGCGaCGACCgCGACGAGcgCGaCGAc -3'
miRNA:   3'- aUGCaGUUGGaGCUGCUCaaGCaGCU- -5'
8982 3' -51.3 NC_002512.2 + 95380 0.68 0.989305
Target:  5'- gACGUCGACgUCGGCGuGGUaCGUgacCGAg -3'
miRNA:   3'- aUGCAGUUGgAGCUGC-UCAaGCA---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.