Results 81 - 100 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8982 | 5' | -55.8 | NC_002512.2 | + | 154320 | 0.69 | 0.871914 |
Target: 5'- gACCgGGAUCCGgaGUCGuCCGcGUCGUCg -3' miRNA: 3'- -UGG-CCUAGGCg-UAGUuGGCcCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 43642 | 0.69 | 0.857253 |
Target: 5'- gGCUGGAUCCGCuguUCca-CGGGUCc-- -3' miRNA: 3'- -UGGCCUAGGCGu--AGuugGCCCAGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 190756 | 0.69 | 0.848857 |
Target: 5'- gGCCGGGacgcucuUCUaCGUgGACCGGGUCAa- -3' miRNA: 3'- -UGGCCU-------AGGcGUAgUUGGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 222186 | 0.69 | 0.84963 |
Target: 5'- cCCGGG-CCGCG---GCCGGcGUCGUCc -3' miRNA: 3'- uGGCCUaGGCGUaguUGGCC-CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 174261 | 0.69 | 0.864683 |
Target: 5'- cCCGGGUCCGgGUCc-CgGGGUC-UCg -3' miRNA: 3'- uGGCCUAGGCgUAGuuGgCCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 135849 | 0.69 | 0.84963 |
Target: 5'- cGCCGaagaGAUCCGCcgCGAaaccgagcguCCGGGUCAc- -3' miRNA: 3'- -UGGC----CUAGGCGuaGUU----------GGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 198160 | 0.69 | 0.84963 |
Target: 5'- gGCCGGGUCgGCGcCGGCCGGcGgaccuccaCGUCg -3' miRNA: 3'- -UGGCCUAGgCGUaGUUGGCC-Ca-------GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 113184 | 0.69 | 0.860248 |
Target: 5'- gACCGGcgUCGcCGUCcgcuccgcgagcgggAGCCGGGUCcUCg -3' miRNA: 3'- -UGGCCuaGGC-GUAG---------------UUGGCCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 132011 | 0.69 | 0.864683 |
Target: 5'- --gGGAUCuCGCGUCGGCgggCGGGUcCGUCu -3' miRNA: 3'- uggCCUAG-GCGUAGUUG---GCCCA-GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 17381 | 0.7 | 0.83302 |
Target: 5'- gAUCGuGGUCCGCGUcCAGCCcgaggucGGaGUCGUCg -3' miRNA: 3'- -UGGC-CUAGGCGUA-GUUGG-------CC-CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 122812 | 0.7 | 0.825664 |
Target: 5'- -gCGGGUCCccuacguccagcGCGUCGACCGGGacuucucCGUCg -3' miRNA: 3'- ugGCCUAGG------------CGUAGUUGGCCCa------GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 140119 | 0.7 | 0.825664 |
Target: 5'- uGCCGGAcgUCCGag--AACUGGGUCAUg -3' miRNA: 3'- -UGGCCU--AGGCguagUUGGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 223000 | 0.7 | 0.83302 |
Target: 5'- uGCCGGGgagCgGCA-CGGCCcagggacGGGUCGUCg -3' miRNA: 3'- -UGGCCUa--GgCGUaGUUGG-------CCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 110546 | 0.7 | 0.841029 |
Target: 5'- gACCGGcguuUCCGCccccgcgcgggagGUCcuGCCGGGUCAg- -3' miRNA: 3'- -UGGCCu---AGGCG-------------UAGu-UGGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 113144 | 0.7 | 0.825664 |
Target: 5'- gGCCuGGUCCaucgcCAUCAGCCGGGccaCGUCg -3' miRNA: 3'- -UGGcCUAGGc----GUAGUUGGCCCa--GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 57009 | 0.7 | 0.820685 |
Target: 5'- gGCCGGGUCgGCgGUCuGACCGGGgggagcggaggccgCGUCc -3' miRNA: 3'- -UGGCCUAGgCG-UAG-UUGGCCCa-------------GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 6353 | 0.7 | 0.814802 |
Target: 5'- gGCCGGcgggCCGCGggcgcgugccguucUCcGCCGuGGUCGUCg -3' miRNA: 3'- -UGGCCua--GGCGU--------------AGuUGGC-CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 195381 | 0.7 | 0.84182 |
Target: 5'- uGCCuGGucaccugCCGgGUCGACCGGGagcUCGUCu -3' miRNA: 3'- -UGG-CCua-----GGCgUAGUUGGCCC---AGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 226403 | 0.7 | 0.833829 |
Target: 5'- cGCCGGGacccgucgcgUCCGCGUCuccgGACgCGGGaccuUCGUCg -3' miRNA: 3'- -UGGCCU----------AGGCGUAG----UUG-GCCC----AGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 3874 | 0.7 | 0.84182 |
Target: 5'- cACCGucAUCgGCGUCAGuuGGGUCgGUCa -3' miRNA: 3'- -UGGCc-UAGgCGUAGUUggCCCAG-UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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