Results 101 - 120 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8982 | 5' | -55.8 | NC_002512.2 | + | 122812 | 0.7 | 0.825664 |
Target: 5'- -gCGGGUCCccuacguccagcGCGUCGACCGGGacuucucCGUCg -3' miRNA: 3'- ugGCCUAGG------------CGUAGUUGGCCCa------GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 140119 | 0.7 | 0.825664 |
Target: 5'- uGCCGGAcgUCCGag--AACUGGGUCAUg -3' miRNA: 3'- -UGGCCU--AGGCguagUUGGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 95725 | 0.71 | 0.791413 |
Target: 5'- cGCCaGGGUCCGgGUCGAcggguacccguCCGGGUUgAUCg -3' miRNA: 3'- -UGG-CCUAGGCgUAGUU-----------GGCCCAG-UAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 172031 | 0.71 | 0.791413 |
Target: 5'- gGCCGGcagcAUgCGCccCAcccGCCGGGUCAUCc -3' miRNA: 3'- -UGGCC----UAgGCGuaGU---UGGCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 179793 | 0.71 | 0.764268 |
Target: 5'- gACCGG-UCCGUcgUGugCGGGUCGa- -3' miRNA: 3'- -UGGCCuAGGCGuaGUugGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 103360 | 0.71 | 0.773439 |
Target: 5'- uCCGGggCCGCGg---UCGGGUCGUCc -3' miRNA: 3'- uGGCCuaGGCGUaguuGGCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 130488 | 0.71 | 0.791413 |
Target: 5'- gGCCcGAUCCGUcgCAGCCGGGcugCGa- -3' miRNA: 3'- -UGGcCUAGGCGuaGUUGGCCCa--GUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 137349 | 0.71 | 0.791413 |
Target: 5'- cGCCGcGG-CCGCcgCGGCCGGGUagAUCc -3' miRNA: 3'- -UGGC-CUaGGCGuaGUUGGCCCAg-UAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 177939 | 0.72 | 0.745601 |
Target: 5'- -gCGGcUCCGCGUCcgacAGCUGGGUgAUCa -3' miRNA: 3'- ugGCCuAGGCGUAG----UUGGCCCAgUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 224935 | 0.72 | 0.745601 |
Target: 5'- gACCGGGUCCGU----GCCGGuGUCGcUCg -3' miRNA: 3'- -UGGCCUAGGCGuaguUGGCC-CAGU-AG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 153285 | 0.72 | 0.697435 |
Target: 5'- gGCUGGcUCCGCuggGUCGGuCCGGGUCGg- -3' miRNA: 3'- -UGGCCuAGGCG---UAGUU-GGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 11150 | 0.72 | 0.745601 |
Target: 5'- gGCCGGAcaCGCGcUCGA-CGGGUCGUCc -3' miRNA: 3'- -UGGCCUagGCGU-AGUUgGCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 109613 | 0.72 | 0.745601 |
Target: 5'- aGCCGGAUcaCCGuCAUCAGCCGGcgGUCc-- -3' miRNA: 3'- -UGGCCUA--GGC-GUAGUUGGCC--CAGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 32567 | 0.72 | 0.736123 |
Target: 5'- cGCCGGGcgCCGCGgguGCCGgGGUCGUg -3' miRNA: 3'- -UGGCCUa-GGCGUaguUGGC-CCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 102152 | 0.72 | 0.736123 |
Target: 5'- gGCCGcGA-CCGCG---GCUGGGUCGUCg -3' miRNA: 3'- -UGGC-CUaGGCGUaguUGGCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 117073 | 0.72 | 0.73517 |
Target: 5'- aACCGGGUggCCGUcaacgccuucaacAcCAAUCGGGUCAUCa -3' miRNA: 3'- -UGGCCUA--GGCG-------------UaGUUGGCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 141195 | 0.72 | 0.707206 |
Target: 5'- uACCGGAUCaugcaGCAgcgCAGCCGGGgCGg- -3' miRNA: 3'- -UGGCCUAGg----CGUa--GUUGGCCCaGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 20432 | 0.73 | 0.687612 |
Target: 5'- cGCCGGAgCCGaagAUCAGCCGgccgaugacGGUCAUCc -3' miRNA: 3'- -UGGCCUaGGCg--UAGUUGGC---------CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 80638 | 0.73 | 0.657915 |
Target: 5'- uCCGGccGUCCGCGgcggCGgcGCCGGGUcCGUCg -3' miRNA: 3'- uGGCC--UAGGCGUa---GU--UGGCCCA-GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 109063 | 0.73 | 0.677746 |
Target: 5'- gACCGGAcccgCCGCGUC--CCGGGUCc-- -3' miRNA: 3'- -UGGCCUa---GGCGUAGuuGGCCCAGuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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