miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 218443 0.68 0.892368
Target:  5'- cCCGGcccccGUCCGCggcGUCcccgcgGACCGcGGUCAUCu -3'
miRNA:   3'- uGGCC-----UAGGCG---UAG------UUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 126979 0.68 0.885761
Target:  5'- --gGGGUCCGCGguccucuccCAGCgCGGGUCGUa -3'
miRNA:   3'- uggCCUAGGCGUa--------GUUG-GCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 193114 0.68 0.892368
Target:  5'- cGCCGGAgagCUGCGUCcGGCCcgacgucacGGUCGUCc -3'
miRNA:   3'- -UGGCCUa--GGCGUAG-UUGGc--------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 10707 0.67 0.922101
Target:  5'- aACCG---CCGCAUCGACaaacGGUCGUCa -3'
miRNA:   3'- -UGGCcuaGGCGUAGUUGgc--CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 195049 0.67 0.946203
Target:  5'- cGCCGcGGcCCGCGggCGGgaGGGUCGUCc -3'
miRNA:   3'- -UGGC-CUaGGCGUa-GUUggCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 139246 0.67 0.932419
Target:  5'- gACCGcGG-CCGCGgc-GCCGGGUCGc- -3'
miRNA:   3'- -UGGC-CUaGGCGUaguUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 45523 0.67 0.932419
Target:  5'- gACgGGA-CCGCAaucCGAUCGGGgCGUCg -3'
miRNA:   3'- -UGgCCUaGGCGUa--GUUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 124790 0.67 0.927374
Target:  5'- cCCGGGUCCGgGUCcagcugacggAGCCGGGa---- -3'
miRNA:   3'- uGGCCUAGGCgUAG----------UUGGCCCaguag -5'
8982 5' -55.8 NC_002512.2 + 145635 0.67 0.946203
Target:  5'- cCCGccuUCCGCGUCGagauGCCGGGcCcgCg -3'
miRNA:   3'- uGGCcu-AGGCGUAGU----UGGCCCaGuaG- -5'
8982 5' -55.8 NC_002512.2 + 103456 0.67 0.927374
Target:  5'- aGCgCGGGUCCGaggacgCGGCuCGGGUC-UCg -3'
miRNA:   3'- -UG-GCCUAGGCgua---GUUG-GCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 7009 0.67 0.922101
Target:  5'- cGCaGGAgagCCGCAgggCcuuGCCGGGcUCGUCg -3'
miRNA:   3'- -UGgCCUa--GGCGUa--Gu--UGGCCC-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 73973 0.67 0.922101
Target:  5'- aGCUGGAggaCGCGUCGgcGCCGGacUCGUCc -3'
miRNA:   3'- -UGGCCUag-GCGUAGU--UGGCCc-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 82095 0.67 0.946628
Target:  5'- cCCGGAUCCGgAUCAuggucuugaggcacuCCaGGUCcUCg -3'
miRNA:   3'- uGGCCUAGGCgUAGUu--------------GGcCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 226195 0.67 0.946203
Target:  5'- gGCCGcg-CCGUuagcgcgCGGCCGGGcCAUCa -3'
miRNA:   3'- -UGGCcuaGGCGua-----GUUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 95836 0.67 0.946203
Target:  5'- cACCGGAcgCGCAgguugaaCAugGCCGGGUgGUCc -3'
miRNA:   3'- -UGGCCUagGCGUa------GU--UGGCCCAgUAG- -5'
8982 5' -55.8 NC_002512.2 + 24680 0.67 0.941833
Target:  5'- cCCGGG-CCGC-UCGGgCGGGggucUCGUCg -3'
miRNA:   3'- uGGCCUaGGCGuAGUUgGCCC----AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 119594 0.67 0.941833
Target:  5'- cGCUGGAUgugCCGCAgcuggucCAggaaguacuccACCGGGUCGUa -3'
miRNA:   3'- -UGGCCUA---GGCGUa------GU-----------UGGCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 104791 0.67 0.937239
Target:  5'- gGCgGGGUCCGCGcgCGG-CGGGUUGUa -3'
miRNA:   3'- -UGgCCUAGGCGUa-GUUgGCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 54511 0.67 0.932419
Target:  5'- gGCCGuGAUgCCG-AUCgAACCGGGaCAUCc -3'
miRNA:   3'- -UGGC-CUA-GGCgUAG-UUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 34957 0.67 0.932419
Target:  5'- -gCGGAgCgGCcgCGACCGGGUCc-- -3'
miRNA:   3'- ugGCCUaGgCGuaGUUGGCCCAGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.