Results 81 - 100 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8982 | 5' | -55.8 | NC_002512.2 | + | 173297 | 0.67 | 0.943608 |
Target: 5'- cGCUGGAgggCCGuCAUCGGCUccaacgccgccugcgGGGUCuUCg -3' miRNA: 3'- -UGGCCUa--GGC-GUAGUUGG---------------CCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 195049 | 0.67 | 0.946203 |
Target: 5'- cGCCGcGGcCCGCGggCGGgaGGGUCGUCc -3' miRNA: 3'- -UGGC-CUaGGCGUa-GUUggCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 226195 | 0.67 | 0.946203 |
Target: 5'- gGCCGcg-CCGUuagcgcgCGGCCGGGcCAUCa -3' miRNA: 3'- -UGGCcuaGGCGua-----GUUGGCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 95836 | 0.67 | 0.946203 |
Target: 5'- cACCGGAcgCGCAgguugaaCAugGCCGGGUgGUCc -3' miRNA: 3'- -UGGCCUagGCGUa------GU--UGGCCCAgUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 24680 | 0.67 | 0.941833 |
Target: 5'- cCCGGG-CCGC-UCGGgCGGGggucUCGUCg -3' miRNA: 3'- uGGCCUaGGCGuAGUUgGCCC----AGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 119594 | 0.67 | 0.941833 |
Target: 5'- cGCUGGAUgugCCGCAgcuggucCAggaaguacuccACCGGGUCGUa -3' miRNA: 3'- -UGGCCUA---GGCGUa------GU-----------UGGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 104791 | 0.67 | 0.937239 |
Target: 5'- gGCgGGGUCCGCGcgCGG-CGGGUUGUa -3' miRNA: 3'- -UGgCCUAGGCGUa-GUUgGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 139246 | 0.67 | 0.932419 |
Target: 5'- gACCGcGG-CCGCGgc-GCCGGGUCGc- -3' miRNA: 3'- -UGGC-CUaGGCGUaguUGGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 54511 | 0.67 | 0.932419 |
Target: 5'- gGCCGuGAUgCCG-AUCgAACCGGGaCAUCc -3' miRNA: 3'- -UGGC-CUA-GGCgUAG-UUGGCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 152953 | 0.67 | 0.927374 |
Target: 5'- -gUGGAUCCGCG--AGCgGGGUCcUCu -3' miRNA: 3'- ugGCCUAGGCGUagUUGgCCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 142280 | 0.67 | 0.927374 |
Target: 5'- gGCCGGGgaCgGCGUCGACgGGGgauccgacgCGUCc -3' miRNA: 3'- -UGGCCUa-GgCGUAGUUGgCCCa--------GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 123648 | 0.67 | 0.927374 |
Target: 5'- cCCGGGUauauaacgCCGCggCGGCCGGGcUCGg- -3' miRNA: 3'- uGGCCUA--------GGCGuaGUUGGCCC-AGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 145635 | 0.67 | 0.946203 |
Target: 5'- cCCGccuUCCGCGUCGagauGCCGGGcCcgCg -3' miRNA: 3'- uGGCcu-AGGCGUAGU----UGGCCCaGuaG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 7009 | 0.67 | 0.922101 |
Target: 5'- cGCaGGAgagCCGCAgggCcuuGCCGGGcUCGUCg -3' miRNA: 3'- -UGgCCUa--GGCGUa--Gu--UGGCCC-AGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 73973 | 0.67 | 0.922101 |
Target: 5'- aGCUGGAggaCGCGUCGgcGCCGGacUCGUCc -3' miRNA: 3'- -UGGCCUag-GCGUAGU--UGGCCc-AGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 82095 | 0.67 | 0.946628 |
Target: 5'- cCCGGAUCCGgAUCAuggucuugaggcacuCCaGGUCcUCg -3' miRNA: 3'- uGGCCUAGGCgUAGUu--------------GGcCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 83817 | 0.67 | 0.922101 |
Target: 5'- cGCCGGcggCgGCGgcucCGGgcCCGGGUCGUCg -3' miRNA: 3'- -UGGCCua-GgCGUa---GUU--GGCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 139126 | 0.67 | 0.922101 |
Target: 5'- gGCCaaGAagCGCuucUCGGCCGGGUCGUUc -3' miRNA: 3'- -UGGc-CUagGCGu--AGUUGGCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 135324 | 0.67 | 0.924237 |
Target: 5'- cCCGaGGUCgGCGUCAGCCGcgccggggugcugcuGGcCGUCg -3' miRNA: 3'- uGGC-CUAGgCGUAGUUGGC---------------CCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 53259 | 0.67 | 0.927374 |
Target: 5'- cACCGGAUCCGagccccCGACgGGGUgGa- -3' miRNA: 3'- -UGGCCUAGGCgua---GUUGgCCCAgUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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