miRNA display CGI


Results 41 - 60 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 3874 0.7 0.84182
Target:  5'- cACCGucAUCgGCGUCAGuuGGGUCgGUCa -3'
miRNA:   3'- -UGGCc-UAGgCGUAGUUggCCCAG-UAG- -5'
8982 5' -55.8 NC_002512.2 + 195381 0.7 0.84182
Target:  5'- uGCCuGGucaccugCCGgGUCGACCGGGagcUCGUCu -3'
miRNA:   3'- -UGG-CCua-----GGCgUAGUUGGCCC---AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 190756 0.69 0.848857
Target:  5'- gGCCGGGacgcucuUCUaCGUgGACCGGGUCAa- -3'
miRNA:   3'- -UGGCCU-------AGGcGUAgUUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 222186 0.69 0.84963
Target:  5'- cCCGGG-CCGCG---GCCGGcGUCGUCc -3'
miRNA:   3'- uGGCCUaGGCGUaguUGGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 198160 0.69 0.84963
Target:  5'- gGCCGGGUCgGCGcCGGCCGGcGgaccuccaCGUCg -3'
miRNA:   3'- -UGGCCUAGgCGUaGUUGGCC-Ca-------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 135849 0.69 0.84963
Target:  5'- cGCCGaagaGAUCCGCcgCGAaaccgagcguCCGGGUCAc- -3'
miRNA:   3'- -UGGC----CUAGGCGuaGUU----------GGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 43642 0.69 0.857253
Target:  5'- gGCUGGAUCCGCuguUCca-CGGGUCc-- -3'
miRNA:   3'- -UGGCCUAGGCGu--AGuugGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 67761 0.69 0.857253
Target:  5'- aGCCGGggUCGUcUCcggcGCCgGGGUCGUCg -3'
miRNA:   3'- -UGGCCuaGGCGuAGu---UGG-CCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 113184 0.69 0.860248
Target:  5'- gACCGGcgUCGcCGUCcgcuccgcgagcgggAGCCGGGUCcUCg -3'
miRNA:   3'- -UGGCCuaGGC-GUAG---------------UUGGCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 132011 0.69 0.864683
Target:  5'- --gGGAUCuCGCGUCGGCgggCGGGUcCGUCu -3'
miRNA:   3'- uggCCUAG-GCGUAGUUG---GCCCA-GUAG- -5'
8982 5' -55.8 NC_002512.2 + 174261 0.69 0.864683
Target:  5'- cCCGGGUCCGgGUCc-CgGGGUC-UCg -3'
miRNA:   3'- uGGCCUAGGCgUAGuuGgCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 154320 0.69 0.871914
Target:  5'- gACCgGGAUCCGgaGUCGuCCGcGUCGUCg -3'
miRNA:   3'- -UGG-CCUAGGCg-UAGUuGGCcCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 126979 0.68 0.885761
Target:  5'- --gGGGUCCGCGguccucuccCAGCgCGGGUCGUa -3'
miRNA:   3'- uggCCUAGGCGUa--------GUUG-GCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 8919 0.68 0.885761
Target:  5'- gGCCaGGG-CgGCcUCGGCCGGGUCGg- -3'
miRNA:   3'- -UGG-CCUaGgCGuAGUUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 218443 0.68 0.892368
Target:  5'- cCCGGcccccGUCCGCggcGUCcccgcgGACCGcGGUCAUCu -3'
miRNA:   3'- uGGCC-----UAGGCG---UAG------UUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 193114 0.68 0.892368
Target:  5'- cGCCGGAgagCUGCGUCcGGCCcgacgucacGGUCGUCc -3'
miRNA:   3'- -UGGCCUa--GGCGUAG-UUGGc--------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 91980 0.68 0.892368
Target:  5'- uCCGGAgggCCGCGU---CCGGGUC-UCc -3'
miRNA:   3'- uGGCCUa--GGCGUAguuGGCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 35044 0.68 0.898758
Target:  5'- uCgGGGUCCGCAcgGGCCGGGaCAg- -3'
miRNA:   3'- uGgCCUAGGCGUagUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 88494 0.68 0.904929
Target:  5'- -gUGGAUCCGCAgccgcuCCGGGUgCAUg -3'
miRNA:   3'- ugGCCUAGGCGUaguu--GGCCCA-GUAg -5'
8982 5' -55.8 NC_002512.2 + 153342 0.68 0.904929
Target:  5'- gGCCGG-UCCGgGUCGGC-GGGUCc-- -3'
miRNA:   3'- -UGGCCuAGGCgUAGUUGgCCCAGuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.