miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 108938 0.68 0.910293
Target:  5'- aGCCGGuuaccgCCGCccuugcccgucggGUCGcCCGGGUcCGUCa -3'
miRNA:   3'- -UGGCCua----GGCG-------------UAGUuGGCCCA-GUAG- -5'
8982 5' -55.8 NC_002512.2 + 226667 0.68 0.910877
Target:  5'- cGCCGGGUCCaGacucUCugagcGCCGGGcCGUCg -3'
miRNA:   3'- -UGGCCUAGG-Cgu--AGu----UGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 151884 0.68 0.916602
Target:  5'- cGCCGGcgAUCCGCGgaUCGuuuCCGGuaggcaugccGUCGUCg -3'
miRNA:   3'- -UGGCC--UAGGCGU--AGUu--GGCC----------CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 139126 0.67 0.922101
Target:  5'- gGCCaaGAagCGCuucUCGGCCGGGUCGUUc -3'
miRNA:   3'- -UGGc-CUagGCGu--AGUUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 7009 0.67 0.922101
Target:  5'- cGCaGGAgagCCGCAgggCcuuGCCGGGcUCGUCg -3'
miRNA:   3'- -UGgCCUa--GGCGUa--Gu--UGGCCC-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 83817 0.67 0.922101
Target:  5'- cGCCGGcggCgGCGgcucCGGgcCCGGGUCGUCg -3'
miRNA:   3'- -UGGCCua-GgCGUa---GUU--GGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 73973 0.67 0.922101
Target:  5'- aGCUGGAggaCGCGUCGgcGCCGGacUCGUCc -3'
miRNA:   3'- -UGGCCUag-GCGUAGU--UGGCCc-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 10707 0.67 0.922101
Target:  5'- aACCG---CCGCAUCGACaaacGGUCGUCa -3'
miRNA:   3'- -UGGCcuaGGCGUAGUUGgc--CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 207504 0.67 0.922101
Target:  5'- uCCGGAUCCGCGacCGACgacgaggaCGGGgccgCGUCc -3'
miRNA:   3'- uGGCCUAGGCGUa-GUUG--------GCCCa---GUAG- -5'
8982 5' -55.8 NC_002512.2 + 135324 0.67 0.924237
Target:  5'- cCCGaGGUCgGCGUCAGCCGcgccggggugcugcuGGcCGUCg -3'
miRNA:   3'- uGGC-CUAGgCGUAGUUGGC---------------CCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 53259 0.67 0.927374
Target:  5'- cACCGGAUCCGagccccCGACgGGGUgGa- -3'
miRNA:   3'- -UGGCCUAGGCgua---GUUGgCCCAgUag -5'
8982 5' -55.8 NC_002512.2 + 215132 0.67 0.927374
Target:  5'- gGCCgGGGUCCGCG-CGACgGGGgaggCGa- -3'
miRNA:   3'- -UGG-CCUAGGCGUaGUUGgCCCa---GUag -5'
8982 5' -55.8 NC_002512.2 + 124790 0.67 0.927374
Target:  5'- cCCGGGUCCGgGUCcagcugacggAGCCGGGa---- -3'
miRNA:   3'- uGGCCUAGGCgUAG----------UUGGCCCaguag -5'
8982 5' -55.8 NC_002512.2 + 152953 0.67 0.927374
Target:  5'- -gUGGAUCCGCG--AGCgGGGUCcUCu -3'
miRNA:   3'- ugGCCUAGGCGUagUUGgCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 142280 0.67 0.927374
Target:  5'- gGCCGGGgaCgGCGUCGACgGGGgauccgacgCGUCc -3'
miRNA:   3'- -UGGCCUa-GgCGUAGUUGgCCCa--------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 123648 0.67 0.927374
Target:  5'- cCCGGGUauauaacgCCGCggCGGCCGGGcUCGg- -3'
miRNA:   3'- uGGCCUA--------GGCGuaGUUGGCCC-AGUag -5'
8982 5' -55.8 NC_002512.2 + 103456 0.67 0.927374
Target:  5'- aGCgCGGGUCCGaggacgCGGCuCGGGUC-UCg -3'
miRNA:   3'- -UG-GCCUAGGCgua---GUUG-GCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 156033 0.67 0.927374
Target:  5'- cCUGGggCCaGUG-CAugCGGGUCGUCg -3'
miRNA:   3'- uGGCCuaGG-CGUaGUugGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 217581 0.67 0.932419
Target:  5'- aGCCGG-UCCgGCGgcgCcGCCucggGGGUCGUCg -3'
miRNA:   3'- -UGGCCuAGG-CGUa--GuUGG----CCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 45523 0.67 0.932419
Target:  5'- gACgGGA-CCGCAaucCGAUCGGGgCGUCg -3'
miRNA:   3'- -UGgCCUaGGCGUa--GUUGGCCCaGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.