Results 81 - 100 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8982 | 5' | -55.8 | NC_002512.2 | + | 167456 | 0.67 | 0.932419 |
Target: 5'- uCCGGA---GCAUCGucuCCGaGGUCGUCg -3' miRNA: 3'- uGGCCUaggCGUAGUu--GGC-CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 95134 | 0.67 | 0.932419 |
Target: 5'- aACCGGAcggUCCGCccCGG-CGGGUCGa- -3' miRNA: 3'- -UGGCCU---AGGCGuaGUUgGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 45523 | 0.67 | 0.932419 |
Target: 5'- gACgGGA-CCGCAaucCGAUCGGGgCGUCg -3' miRNA: 3'- -UGgCCUaGGCGUa--GUUGGCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 54511 | 0.67 | 0.932419 |
Target: 5'- gGCCGuGAUgCCG-AUCgAACCGGGaCAUCc -3' miRNA: 3'- -UGGC-CUA-GGCgUAG-UUGGCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 139246 | 0.67 | 0.932419 |
Target: 5'- gACCGcGG-CCGCGgc-GCCGGGUCGc- -3' miRNA: 3'- -UGGC-CUaGGCGUaguUGGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 34957 | 0.67 | 0.932419 |
Target: 5'- -gCGGAgCgGCcgCGACCGGGUCc-- -3' miRNA: 3'- ugGCCUaGgCGuaGUUGGCCCAGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 104791 | 0.67 | 0.937239 |
Target: 5'- gGCgGGGUCCGCGcgCGG-CGGGUUGUa -3' miRNA: 3'- -UGgCCUAGGCGUa-GUUgGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 77997 | 0.67 | 0.937239 |
Target: 5'- uACCGGAaacgaUCCGCGgaucGCCGGcgcccacgaGUCAUCc -3' miRNA: 3'- -UGGCCU-----AGGCGUagu-UGGCC---------CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 119594 | 0.67 | 0.941833 |
Target: 5'- cGCUGGAUgugCCGCAgcuggucCAggaaguacuccACCGGGUCGUa -3' miRNA: 3'- -UGGCCUA---GGCGUa------GU-----------UGGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 108470 | 0.67 | 0.941833 |
Target: 5'- cGCCGGGUUCGCGcUgAACgugacGGUCGUCa -3' miRNA: 3'- -UGGCCUAGGCGU-AgUUGgc---CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 24680 | 0.67 | 0.941833 |
Target: 5'- cCCGGG-CCGC-UCGGgCGGGggucUCGUCg -3' miRNA: 3'- uGGCCUaGGCGuAGUUgGCCC----AGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 107209 | 0.67 | 0.941833 |
Target: 5'- aGCCGGG-CCGCGgccggggAGCCGcGGUCAccgUCg -3' miRNA: 3'- -UGGCCUaGGCGUag-----UUGGC-CCAGU---AG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 113154 | 0.67 | 0.941833 |
Target: 5'- cGCCGGccUCGCcgCGGCCGGG-CGg- -3' miRNA: 3'- -UGGCCuaGGCGuaGUUGGCCCaGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 206717 | 0.67 | 0.941833 |
Target: 5'- cCCGG-UCCGUuUC-ACCGGGcUCAUg -3' miRNA: 3'- uGGCCuAGGCGuAGuUGGCCC-AGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 173297 | 0.67 | 0.943608 |
Target: 5'- cGCUGGAgggCCGuCAUCGGCUccaacgccgccugcgGGGUCuUCg -3' miRNA: 3'- -UGGCCUa--GGC-GUAGUUGG---------------CCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 195049 | 0.67 | 0.946203 |
Target: 5'- cGCCGcGGcCCGCGggCGGgaGGGUCGUCc -3' miRNA: 3'- -UGGC-CUaGGCGUa-GUUggCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 226195 | 0.67 | 0.946203 |
Target: 5'- gGCCGcg-CCGUuagcgcgCGGCCGGGcCAUCa -3' miRNA: 3'- -UGGCcuaGGCGua-----GUUGGCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 95836 | 0.67 | 0.946203 |
Target: 5'- cACCGGAcgCGCAgguugaaCAugGCCGGGUgGUCc -3' miRNA: 3'- -UGGCCUagGCGUa------GU--UGGCCCAgUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 145635 | 0.67 | 0.946203 |
Target: 5'- cCCGccuUCCGCGUCGagauGCCGGGcCcgCg -3' miRNA: 3'- uGGCcu-AGGCGUAGU----UGGCCCaGuaG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 82095 | 0.67 | 0.946628 |
Target: 5'- cCCGGAUCCGgAUCAuggucuugaggcacuCCaGGUCcUCg -3' miRNA: 3'- uGGCCUAGGCgUAGUu--------------GGcCCAGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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