miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 102347 0.66 0.950352
Target:  5'- aGCCGGGUCCggGCGUCggUCGuccGGagGUCc -3'
miRNA:   3'- -UGGCCUAGG--CGUAGuuGGC---CCagUAG- -5'
8982 5' -55.8 NC_002512.2 + 225592 0.66 0.950352
Target:  5'- cGCCGGGUCUuCGacCAGCUGGccGUCGUCg -3'
miRNA:   3'- -UGGCCUAGGcGUa-GUUGGCC--CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 76626 0.66 0.954281
Target:  5'- gACCaGGAcccgCCGCAUCGcAUCGGGUUu-- -3'
miRNA:   3'- -UGG-CCUa---GGCGUAGU-UGGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 77122 0.66 0.954281
Target:  5'- cGCgGGGUCCGauccuuuUCGACCGGGcUCc-- -3'
miRNA:   3'- -UGgCCUAGGCgu-----AGUUGGCCC-AGuag -5'
8982 5' -55.8 NC_002512.2 + 184660 0.66 0.954281
Target:  5'- cCCGGAUCCuuaucGUcUCGAUCGGGUgGgUCg -3'
miRNA:   3'- uGGCCUAGG-----CGuAGUUGGCCCAgU-AG- -5'
8982 5' -55.8 NC_002512.2 + 99116 0.66 0.954281
Target:  5'- gGCCGcuccaagaGAUCgCGCA-CGGCCGGaUCGUCg -3'
miRNA:   3'- -UGGC--------CUAG-GCGUaGUUGGCCcAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 155139 0.66 0.954281
Target:  5'- cGCCGGGUCCcCGaaAACa-GGUCGUCg -3'
miRNA:   3'- -UGGCCUAGGcGUagUUGgcCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 4202 0.66 0.954662
Target:  5'- cGCCGGAgaucggugggagcggCCGCGggGAgCGGGaCGUCg -3'
miRNA:   3'- -UGGCCUa--------------GGCGUagUUgGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 19670 0.66 0.957995
Target:  5'- gAUCGGGUCCGCGUCu-CCGucUCGg- -3'
miRNA:   3'- -UGGCCUAGGCGUAGuuGGCccAGUag -5'
8982 5' -55.8 NC_002512.2 + 36381 0.66 0.957995
Target:  5'- cACCGuGAcgUUgGCG-CGACCGaGGUCGUCc -3'
miRNA:   3'- -UGGC-CU--AGgCGUaGUUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 49195 0.66 0.957995
Target:  5'- -gCGGAUCCaGUA-CAACCGGGcggCGUg -3'
miRNA:   3'- ugGCCUAGG-CGUaGUUGGCCCa--GUAg -5'
8982 5' -55.8 NC_002512.2 + 72850 0.66 0.957995
Target:  5'- uGCCGGGUCCucGCu----CCGGGccgCGUCg -3'
miRNA:   3'- -UGGCCUAGG--CGuaguuGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 184210 0.66 0.960468
Target:  5'- cCCGGA-CCGCggguucucucugggGUCGACCgucGGGUCGg- -3'
miRNA:   3'- uGGCCUaGGCG--------------UAGUUGG---CCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 209435 0.66 0.961496
Target:  5'- cGCgCGGAUgaCCGuCAUCGGCCGGcUgAUCu -3'
miRNA:   3'- -UG-GCCUA--GGC-GUAGUUGGCCcAgUAG- -5'
8982 5' -55.8 NC_002512.2 + 91182 0.66 0.961496
Target:  5'- uGCgGGAUCCGgGUCAGggagaccgccacCCGGGgcaCGUUc -3'
miRNA:   3'- -UGgCCUAGGCgUAGUU------------GGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 175708 0.66 0.961496
Target:  5'- aGCUGGAUCCGgAUCccgcguCC-GGUCAUg -3'
miRNA:   3'- -UGGCCUAGGCgUAGuu----GGcCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 184753 0.66 0.961496
Target:  5'- --aGGAUCgGCGggCGGcCCGuGGUCGUCg -3'
miRNA:   3'- uggCCUAGgCGUa-GUU-GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 156417 0.66 0.961496
Target:  5'- cCCGGAUCgGCAUgcuguccgCGGCCGGGc---- -3'
miRNA:   3'- uGGCCUAGgCGUA--------GUUGGCCCaguag -5'
8982 5' -55.8 NC_002512.2 + 60740 0.66 0.961496
Target:  5'- aACCGcGA-CCGCggCGGCCGGG-CGg- -3'
miRNA:   3'- -UGGC-CUaGGCGuaGUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 124097 0.66 0.961496
Target:  5'- -aCGGAcgCCGCGcCuuuCCGGGUCAc- -3'
miRNA:   3'- ugGCCUa-GGCGUaGuu-GGCCCAGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.