miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 53259 0.67 0.927374
Target:  5'- cACCGGAUCCGagccccCGACgGGGUgGa- -3'
miRNA:   3'- -UGGCCUAGGCgua---GUUGgCCCAgUag -5'
8982 5' -55.8 NC_002512.2 + 135324 0.67 0.924237
Target:  5'- cCCGaGGUCgGCGUCAGCCGcgccggggugcugcuGGcCGUCg -3'
miRNA:   3'- uGGC-CUAGgCGUAGUUGGC---------------CCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 7009 0.67 0.922101
Target:  5'- cGCaGGAgagCCGCAgggCcuuGCCGGGcUCGUCg -3'
miRNA:   3'- -UGgCCUa--GGCGUa--Gu--UGGCCC-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 73973 0.67 0.922101
Target:  5'- aGCUGGAggaCGCGUCGgcGCCGGacUCGUCc -3'
miRNA:   3'- -UGGCCUag-GCGUAGU--UGGCCc-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 83817 0.67 0.922101
Target:  5'- cGCCGGcggCgGCGgcucCGGgcCCGGGUCGUCg -3'
miRNA:   3'- -UGGCCua-GgCGUa---GUU--GGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 139126 0.67 0.922101
Target:  5'- gGCCaaGAagCGCuucUCGGCCGGGUCGUUc -3'
miRNA:   3'- -UGGc-CUagGCGu--AGUUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 207504 0.67 0.922101
Target:  5'- uCCGGAUCCGCGacCGACgacgaggaCGGGgccgCGUCc -3'
miRNA:   3'- uGGCCUAGGCGUa-GUUG--------GCCCa---GUAG- -5'
8982 5' -55.8 NC_002512.2 + 10707 0.67 0.922101
Target:  5'- aACCG---CCGCAUCGACaaacGGUCGUCa -3'
miRNA:   3'- -UGGCcuaGGCGUAGUUGgc--CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 151884 0.68 0.916602
Target:  5'- cGCCGGcgAUCCGCGgaUCGuuuCCGGuaggcaugccGUCGUCg -3'
miRNA:   3'- -UGGCC--UAGGCGU--AGUu--GGCC----------CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 226667 0.68 0.910877
Target:  5'- cGCCGGGUCCaGacucUCugagcGCCGGGcCGUCg -3'
miRNA:   3'- -UGGCCUAGG-Cgu--AGu----UGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 108938 0.68 0.910293
Target:  5'- aGCCGGuuaccgCCGCccuugcccgucggGUCGcCCGGGUcCGUCa -3'
miRNA:   3'- -UGGCCua----GGCG-------------UAGUuGGCCCA-GUAG- -5'
8982 5' -55.8 NC_002512.2 + 153342 0.68 0.904929
Target:  5'- gGCCGG-UCCGgGUCGGC-GGGUCc-- -3'
miRNA:   3'- -UGGCCuAGGCgUAGUUGgCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 88494 0.68 0.904929
Target:  5'- -gUGGAUCCGCAgccgcuCCGGGUgCAUg -3'
miRNA:   3'- ugGCCUAGGCGUaguu--GGCCCA-GUAg -5'
8982 5' -55.8 NC_002512.2 + 35044 0.68 0.898758
Target:  5'- uCgGGGUCCGCAcgGGCCGGGaCAg- -3'
miRNA:   3'- uGgCCUAGGCGUagUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 218443 0.68 0.892368
Target:  5'- cCCGGcccccGUCCGCggcGUCcccgcgGACCGcGGUCAUCu -3'
miRNA:   3'- uGGCC-----UAGGCG---UAG------UUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 193114 0.68 0.892368
Target:  5'- cGCCGGAgagCUGCGUCcGGCCcgacgucacGGUCGUCc -3'
miRNA:   3'- -UGGCCUa--GGCGUAG-UUGGc--------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 91980 0.68 0.892368
Target:  5'- uCCGGAgggCCGCGU---CCGGGUC-UCc -3'
miRNA:   3'- uGGCCUa--GGCGUAguuGGCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 126979 0.68 0.885761
Target:  5'- --gGGGUCCGCGguccucuccCAGCgCGGGUCGUa -3'
miRNA:   3'- uggCCUAGGCGUa--------GUUG-GCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 8919 0.68 0.885761
Target:  5'- gGCCaGGG-CgGCcUCGGCCGGGUCGg- -3'
miRNA:   3'- -UGG-CCUaGgCGuAGUUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 154320 0.69 0.871914
Target:  5'- gACCgGGAUCCGgaGUCGuCCGcGUCGUCg -3'
miRNA:   3'- -UGG-CCUAGGCg-UAGUuGGCcCAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.