miRNA display CGI


Results 81 - 100 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 132011 0.69 0.864683
Target:  5'- --gGGAUCuCGCGUCGGCgggCGGGUcCGUCu -3'
miRNA:   3'- uggCCUAG-GCGUAGUUG---GCCCA-GUAG- -5'
8982 5' -55.8 NC_002512.2 + 174261 0.69 0.864683
Target:  5'- cCCGGGUCCGgGUCc-CgGGGUC-UCg -3'
miRNA:   3'- uGGCCUAGGCgUAGuuGgCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 113184 0.69 0.860248
Target:  5'- gACCGGcgUCGcCGUCcgcuccgcgagcgggAGCCGGGUCcUCg -3'
miRNA:   3'- -UGGCCuaGGC-GUAG---------------UUGGCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 67761 0.69 0.857253
Target:  5'- aGCCGGggUCGUcUCcggcGCCgGGGUCGUCg -3'
miRNA:   3'- -UGGCCuaGGCGuAGu---UGG-CCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 43642 0.69 0.857253
Target:  5'- gGCUGGAUCCGCuguUCca-CGGGUCc-- -3'
miRNA:   3'- -UGGCCUAGGCGu--AGuugGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 135849 0.69 0.84963
Target:  5'- cGCCGaagaGAUCCGCcgCGAaaccgagcguCCGGGUCAc- -3'
miRNA:   3'- -UGGC----CUAGGCGuaGUU----------GGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 198160 0.69 0.84963
Target:  5'- gGCCGGGUCgGCGcCGGCCGGcGgaccuccaCGUCg -3'
miRNA:   3'- -UGGCCUAGgCGUaGUUGGCC-Ca-------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 222186 0.69 0.84963
Target:  5'- cCCGGG-CCGCG---GCCGGcGUCGUCc -3'
miRNA:   3'- uGGCCUaGGCGUaguUGGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 190756 0.69 0.848857
Target:  5'- gGCCGGGacgcucuUCUaCGUgGACCGGGUCAa- -3'
miRNA:   3'- -UGGCCU-------AGGcGUAgUUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 3874 0.7 0.84182
Target:  5'- cACCGucAUCgGCGUCAGuuGGGUCgGUCa -3'
miRNA:   3'- -UGGCc-UAGgCGUAGUUggCCCAG-UAG- -5'
8982 5' -55.8 NC_002512.2 + 195381 0.7 0.84182
Target:  5'- uGCCuGGucaccugCCGgGUCGACCGGGagcUCGUCu -3'
miRNA:   3'- -UGG-CCua-----GGCgUAGUUGGCCC---AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 110546 0.7 0.841029
Target:  5'- gACCGGcguuUCCGCccccgcgcgggagGUCcuGCCGGGUCAg- -3'
miRNA:   3'- -UGGCCu---AGGCG-------------UAGu-UGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 226403 0.7 0.833829
Target:  5'- cGCCGGGacccgucgcgUCCGCGUCuccgGACgCGGGaccuUCGUCg -3'
miRNA:   3'- -UGGCCU----------AGGCGUAG----UUG-GCCC----AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 17381 0.7 0.83302
Target:  5'- gAUCGuGGUCCGCGUcCAGCCcgaggucGGaGUCGUCg -3'
miRNA:   3'- -UGGC-CUAGGCGUA-GUUGG-------CC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 223000 0.7 0.83302
Target:  5'- uGCCGGGgagCgGCA-CGGCCcagggacGGGUCGUCg -3'
miRNA:   3'- -UGGCCUa--GgCGUaGUUGG-------CCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 122812 0.7 0.825664
Target:  5'- -gCGGGUCCccuacguccagcGCGUCGACCGGGacuucucCGUCg -3'
miRNA:   3'- ugGCCUAGG------------CGUAGUUGGCCCa------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 140119 0.7 0.825664
Target:  5'- uGCCGGAcgUCCGag--AACUGGGUCAUg -3'
miRNA:   3'- -UGGCCU--AGGCguagUUGGCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 113144 0.7 0.825664
Target:  5'- gGCCuGGUCCaucgcCAUCAGCCGGGccaCGUCg -3'
miRNA:   3'- -UGGcCUAGGc----GUAGUUGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 223087 0.7 0.820685
Target:  5'- cCCGGGUCCGCGgcugcgUCGACggggagggggauccgCGGGUCGa- -3'
miRNA:   3'- uGGCCUAGGCGU------AGUUG---------------GCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 57009 0.7 0.820685
Target:  5'- gGCCGGGUCgGCgGUCuGACCGGGgggagcggaggccgCGUCc -3'
miRNA:   3'- -UGGCCUAGgCG-UAG-UUGGCCCa-------------GUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.