miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 110546 0.7 0.841029
Target:  5'- gACCGGcguuUCCGCccccgcgcgggagGUCcuGCCGGGUCAg- -3'
miRNA:   3'- -UGGCCu---AGGCG-------------UAGu-UGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 113144 0.7 0.825664
Target:  5'- gGCCuGGUCCaucgcCAUCAGCCGGGccaCGUCg -3'
miRNA:   3'- -UGGcCUAGGc----GUAGUUGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 113154 0.67 0.941833
Target:  5'- cGCCGGccUCGCcgCGGCCGGG-CGg- -3'
miRNA:   3'- -UGGCCuaGGCGuaGUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 113184 0.69 0.860248
Target:  5'- gACCGGcgUCGcCGUCcgcuccgcgagcgggAGCCGGGUCcUCg -3'
miRNA:   3'- -UGGCCuaGGC-GUAG---------------UUGGCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 117073 0.72 0.73517
Target:  5'- aACCGGGUggCCGUcaacgccuucaacAcCAAUCGGGUCAUCa -3'
miRNA:   3'- -UGGCCUA--GGCG-------------UaGUUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 119594 0.67 0.941833
Target:  5'- cGCUGGAUgugCCGCAgcuggucCAggaaguacuccACCGGGUCGUa -3'
miRNA:   3'- -UGGCCUA---GGCGUa------GU-----------UGGCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 122812 0.7 0.825664
Target:  5'- -gCGGGUCCccuacguccagcGCGUCGACCGGGacuucucCGUCg -3'
miRNA:   3'- ugGCCUAGG------------CGUAGUUGGCCCa------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 123648 0.67 0.927374
Target:  5'- cCCGGGUauauaacgCCGCggCGGCCGGGcUCGg- -3'
miRNA:   3'- uGGCCUA--------GGCGuaGUUGGCCC-AGUag -5'
8982 5' -55.8 NC_002512.2 + 124097 0.66 0.961496
Target:  5'- -aCGGAcgCCGCGcCuuuCCGGGUCAc- -3'
miRNA:   3'- ugGCCUa-GGCGUaGuu-GGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 124790 0.67 0.927374
Target:  5'- cCCGGGUCCGgGUCcagcugacggAGCCGGGa---- -3'
miRNA:   3'- uGGCCUAGGCgUAG----------UUGGCCCaguag -5'
8982 5' -55.8 NC_002512.2 + 126979 0.68 0.885761
Target:  5'- --gGGGUCCGCGguccucuccCAGCgCGGGUCGUa -3'
miRNA:   3'- uggCCUAGGCGUa--------GUUG-GCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 130488 0.71 0.791413
Target:  5'- gGCCcGAUCCGUcgCAGCCGGGcugCGa- -3'
miRNA:   3'- -UGGcCUAGGCGuaGUUGGCCCa--GUag -5'
8982 5' -55.8 NC_002512.2 + 131335 0.75 0.539298
Target:  5'- cGCCGGAUCCGCGgaacGCCGGG-CGa- -3'
miRNA:   3'- -UGGCCUAGGCGUagu-UGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 132011 0.69 0.864683
Target:  5'- --gGGAUCuCGCGUCGGCgggCGGGUcCGUCu -3'
miRNA:   3'- uggCCUAG-GCGUAGUUG---GCCCA-GUAG- -5'
8982 5' -55.8 NC_002512.2 + 134088 0.66 0.964791
Target:  5'- uAUCGGAUCCGCGUCc-CCGGcGcCu-- -3'
miRNA:   3'- -UGGCCUAGGCGUAGuuGGCC-CaGuag -5'
8982 5' -55.8 NC_002512.2 + 135324 0.67 0.924237
Target:  5'- cCCGaGGUCgGCGUCAGCCGcgccggggugcugcuGGcCGUCg -3'
miRNA:   3'- uGGC-CUAGgCGUAGUUGGC---------------CCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 135849 0.69 0.84963
Target:  5'- cGCCGaagaGAUCCGCcgCGAaaccgagcguCCGGGUCAc- -3'
miRNA:   3'- -UGGC----CUAGGCGuaGUU----------GGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 136168 0.66 0.964791
Target:  5'- cCCGucGAUCCGCcgCGcggcggggucGCCGGGaucgCGUCg -3'
miRNA:   3'- uGGC--CUAGGCGuaGU----------UGGCCCa---GUAG- -5'
8982 5' -55.8 NC_002512.2 + 137349 0.71 0.791413
Target:  5'- cGCCGcGG-CCGCcgCGGCCGGGUagAUCc -3'
miRNA:   3'- -UGGC-CUaGGCGuaGUUGGCCCAg-UAG- -5'
8982 5' -55.8 NC_002512.2 + 138323 0.66 0.964791
Target:  5'- -gCGGAUCCGCGagagcggcguggUCAgcGCCaGGUgGUCc -3'
miRNA:   3'- ugGCCUAGGCGU------------AGU--UGGcCCAgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.