miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 139126 0.67 0.922101
Target:  5'- gGCCaaGAagCGCuucUCGGCCGGGUCGUUc -3'
miRNA:   3'- -UGGc-CUagGCGu--AGUUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 139246 0.67 0.932419
Target:  5'- gACCGcGG-CCGCGgc-GCCGGGUCGc- -3'
miRNA:   3'- -UGGC-CUaGGCGUaguUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 140119 0.7 0.825664
Target:  5'- uGCCGGAcgUCCGag--AACUGGGUCAUg -3'
miRNA:   3'- -UGGCCU--AGGCguagUUGGCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 141195 0.72 0.707206
Target:  5'- uACCGGAUCaugcaGCAgcgCAGCCGGGgCGg- -3'
miRNA:   3'- -UGGCCUAGg----CGUa--GUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 142280 0.67 0.927374
Target:  5'- gGCCGGGgaCgGCGUCGACgGGGgauccgacgCGUCc -3'
miRNA:   3'- -UGGCCUa-GgCGUAGUUGgCCCa--------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 145635 0.67 0.946203
Target:  5'- cCCGccuUCCGCGUCGagauGCCGGGcCcgCg -3'
miRNA:   3'- uGGCcu-AGGCGUAGU----UGGCCCaGuaG- -5'
8982 5' -55.8 NC_002512.2 + 151884 0.68 0.916602
Target:  5'- cGCCGGcgAUCCGCGgaUCGuuuCCGGuaggcaugccGUCGUCg -3'
miRNA:   3'- -UGGCC--UAGGCGU--AGUu--GGCC----------CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 152953 0.67 0.927374
Target:  5'- -gUGGAUCCGCG--AGCgGGGUCcUCu -3'
miRNA:   3'- ugGCCUAGGCGUagUUGgCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 153285 0.72 0.697435
Target:  5'- gGCUGGcUCCGCuggGUCGGuCCGGGUCGg- -3'
miRNA:   3'- -UGGCCuAGGCG---UAGUU-GGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 153342 0.68 0.904929
Target:  5'- gGCCGG-UCCGgGUCGGC-GGGUCc-- -3'
miRNA:   3'- -UGGCCuAGGCgUAGUUGgCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 154320 0.69 0.871914
Target:  5'- gACCgGGAUCCGgaGUCGuCCGcGUCGUCg -3'
miRNA:   3'- -UGG-CCUAGGCg-UAGUuGGCcCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 155139 0.66 0.954281
Target:  5'- cGCCGGGUCCcCGaaAACa-GGUCGUCg -3'
miRNA:   3'- -UGGCCUAGGcGUagUUGgcCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 156033 0.67 0.927374
Target:  5'- cCUGGggCCaGUG-CAugCGGGUCGUCg -3'
miRNA:   3'- uGGCCuaGG-CGUaGUugGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 156417 0.66 0.961496
Target:  5'- cCCGGAUCgGCAUgcuguccgCGGCCGGGc---- -3'
miRNA:   3'- uGGCCUAGgCGUA--------GUUGGCCCaguag -5'
8982 5' -55.8 NC_002512.2 + 167456 0.67 0.932419
Target:  5'- uCCGGA---GCAUCGucuCCGaGGUCGUCg -3'
miRNA:   3'- uGGCCUaggCGUAGUu--GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 170033 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 172031 0.71 0.791413
Target:  5'- gGCCGGcagcAUgCGCccCAcccGCCGGGUCAUCc -3'
miRNA:   3'- -UGGCC----UAgGCGuaGU---UGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 173297 0.67 0.943608
Target:  5'- cGCUGGAgggCCGuCAUCGGCUccaacgccgccugcgGGGUCuUCg -3'
miRNA:   3'- -UGGCCUa--GGC-GUAGUUGG---------------CCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 174261 0.69 0.864683
Target:  5'- cCCGGGUCCGgGUCc-CgGGGUC-UCg -3'
miRNA:   3'- uGGCCUAGGCgUAGuuGgCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 175708 0.66 0.961496
Target:  5'- aGCUGGAUCCGgAUCccgcguCC-GGUCAUg -3'
miRNA:   3'- -UGGCCUAGGCgUAGuu----GGcCCAGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.