miRNA display CGI


Results 101 - 120 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 177939 0.72 0.745601
Target:  5'- -gCGGcUCCGCGUCcgacAGCUGGGUgAUCa -3'
miRNA:   3'- ugGCCuAGGCGUAG----UUGGCCCAgUAG- -5'
8982 5' -55.8 NC_002512.2 + 179793 0.71 0.764268
Target:  5'- gACCGG-UCCGUcgUGugCGGGUCGa- -3'
miRNA:   3'- -UGGCCuAGGCGuaGUugGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 184210 0.66 0.960468
Target:  5'- cCCGGA-CCGCggguucucucugggGUCGACCgucGGGUCGg- -3'
miRNA:   3'- uGGCCUaGGCG--------------UAGUUGG---CCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 184660 0.66 0.954281
Target:  5'- cCCGGAUCCuuaucGUcUCGAUCGGGUgGgUCg -3'
miRNA:   3'- uGGCCUAGG-----CGuAGUUGGCCCAgU-AG- -5'
8982 5' -55.8 NC_002512.2 + 184753 0.66 0.961496
Target:  5'- --aGGAUCgGCGggCGGcCCGuGGUCGUCg -3'
miRNA:   3'- uggCCUAGgCGUa-GUU-GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 188584 0.79 0.370741
Target:  5'- cUCGG-UCUGCGUCGACCaGGUCGUCg -3'
miRNA:   3'- uGGCCuAGGCGUAGUUGGcCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 190756 0.69 0.848857
Target:  5'- gGCCGGGacgcucuUCUaCGUgGACCGGGUCAa- -3'
miRNA:   3'- -UGGCCU-------AGGcGUAgUUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 191729 0.67 0.932419
Target:  5'- -gUGGAccUCCGCGUCggUCGGGgUGUCc -3'
miRNA:   3'- ugGCCU--AGGCGUAGuuGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 193114 0.68 0.892368
Target:  5'- cGCCGGAgagCUGCGUCcGGCCcgacgucacGGUCGUCc -3'
miRNA:   3'- -UGGCCUa--GGCGUAG-UUGGc--------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 193927 0.75 0.558753
Target:  5'- cCCGGAcUCCGCugaCGGCCGGGgaaCGUCg -3'
miRNA:   3'- uGGCCU-AGGCGua-GUUGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 194509 1.1 0.004262
Target:  5'- aACCGGAUCCGCAUCAACCGGGUCAUCa -3'
miRNA:   3'- -UGGCCUAGGCGUAGUUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 195049 0.67 0.946203
Target:  5'- cGCCGcGGcCCGCGggCGGgaGGGUCGUCc -3'
miRNA:   3'- -UGGC-CUaGGCGUa-GUUggCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 195381 0.7 0.84182
Target:  5'- uGCCuGGucaccugCCGgGUCGACCGGGagcUCGUCu -3'
miRNA:   3'- -UGG-CCua-----GGCgUAGUUGGCCC---AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 198160 0.69 0.84963
Target:  5'- gGCCGGGUCgGCGcCGGCCGGcGgaccuccaCGUCg -3'
miRNA:   3'- -UGGCCUAGgCGUaGUUGGCC-Ca-------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 206717 0.67 0.941833
Target:  5'- cCCGG-UCCGUuUC-ACCGGGcUCAUg -3'
miRNA:   3'- uGGCCuAGGCGuAGuUGGCCC-AGUAg -5'
8982 5' -55.8 NC_002512.2 + 207504 0.67 0.922101
Target:  5'- uCCGGAUCCGCGacCGACgacgaggaCGGGgccgCGUCc -3'
miRNA:   3'- uGGCCUAGGCGUa-GUUG--------GCCCa---GUAG- -5'
8982 5' -55.8 NC_002512.2 + 209435 0.66 0.961496
Target:  5'- cGCgCGGAUgaCCGuCAUCGGCCGGcUgAUCu -3'
miRNA:   3'- -UG-GCCUA--GGC-GUAGUUGGCCcAgUAG- -5'
8982 5' -55.8 NC_002512.2 + 213249 0.73 0.647966
Target:  5'- gGCCGGAUCUGCGUCuacGACaUGGGgcccgugugcuUCAUCa -3'
miRNA:   3'- -UGGCCUAGGCGUAG---UUG-GCCC-----------AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 215132 0.67 0.927374
Target:  5'- gGCCgGGGUCCGCG-CGACgGGGgaggCGa- -3'
miRNA:   3'- -UGG-CCUAGGCGUaGUUGgCCCa---GUag -5'
8982 5' -55.8 NC_002512.2 + 217581 0.67 0.932419
Target:  5'- aGCCGG-UCCgGCGgcgCcGCCucggGGGUCGUCg -3'
miRNA:   3'- -UGGCCuAGG-CGUa--GuUGG----CCCAGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.