miRNA display CGI


Results 21 - 40 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 194509 1.1 0.004262
Target:  5'- aACCGGAUCCGCAUCAACCGGGUCAUCa -3'
miRNA:   3'- -UGGCCUAGGCGUAGUUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 193927 0.75 0.558753
Target:  5'- cCCGGAcUCCGCugaCGGCCGGGgaaCGUCg -3'
miRNA:   3'- uGGCCU-AGGCGua-GUUGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 193114 0.68 0.892368
Target:  5'- cGCCGGAgagCUGCGUCcGGCCcgacgucacGGUCGUCc -3'
miRNA:   3'- -UGGCCUa--GGCGUAG-UUGGc--------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 191729 0.67 0.932419
Target:  5'- -gUGGAccUCCGCGUCggUCGGGgUGUCc -3'
miRNA:   3'- ugGCCU--AGGCGUAGuuGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 190756 0.69 0.848857
Target:  5'- gGCCGGGacgcucuUCUaCGUgGACCGGGUCAa- -3'
miRNA:   3'- -UGGCCU-------AGGcGUAgUUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 188584 0.79 0.370741
Target:  5'- cUCGG-UCUGCGUCGACCaGGUCGUCg -3'
miRNA:   3'- uGGCCuAGGCGUAGUUGGcCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 184753 0.66 0.961496
Target:  5'- --aGGAUCgGCGggCGGcCCGuGGUCGUCg -3'
miRNA:   3'- uggCCUAGgCGUa-GUU-GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 184660 0.66 0.954281
Target:  5'- cCCGGAUCCuuaucGUcUCGAUCGGGUgGgUCg -3'
miRNA:   3'- uGGCCUAGG-----CGuAGUUGGCCCAgU-AG- -5'
8982 5' -55.8 NC_002512.2 + 184210 0.66 0.960468
Target:  5'- cCCGGA-CCGCggguucucucugggGUCGACCgucGGGUCGg- -3'
miRNA:   3'- uGGCCUaGGCG--------------UAGUUGG---CCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 179793 0.71 0.764268
Target:  5'- gACCGG-UCCGUcgUGugCGGGUCGa- -3'
miRNA:   3'- -UGGCCuAGGCGuaGUugGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 177939 0.72 0.745601
Target:  5'- -gCGGcUCCGCGUCcgacAGCUGGGUgAUCa -3'
miRNA:   3'- ugGCCuAGGCGUAG----UUGGCCCAgUAG- -5'
8982 5' -55.8 NC_002512.2 + 175708 0.66 0.961496
Target:  5'- aGCUGGAUCCGgAUCccgcguCC-GGUCAUg -3'
miRNA:   3'- -UGGCCUAGGCgUAGuu----GGcCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 174261 0.69 0.864683
Target:  5'- cCCGGGUCCGgGUCc-CgGGGUC-UCg -3'
miRNA:   3'- uGGCCUAGGCgUAGuuGgCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 173297 0.67 0.943608
Target:  5'- cGCUGGAgggCCGuCAUCGGCUccaacgccgccugcgGGGUCuUCg -3'
miRNA:   3'- -UGGCCUa--GGC-GUAGUUGG---------------CCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 172031 0.71 0.791413
Target:  5'- gGCCGGcagcAUgCGCccCAcccGCCGGGUCAUCc -3'
miRNA:   3'- -UGGCC----UAgGCGuaGU---UGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 170033 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 167456 0.67 0.932419
Target:  5'- uCCGGA---GCAUCGucuCCGaGGUCGUCg -3'
miRNA:   3'- uGGCCUaggCGUAGUu--GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 156417 0.66 0.961496
Target:  5'- cCCGGAUCgGCAUgcuguccgCGGCCGGGc---- -3'
miRNA:   3'- uGGCCUAGgCGUA--------GUUGGCCCaguag -5'
8982 5' -55.8 NC_002512.2 + 156033 0.67 0.927374
Target:  5'- cCUGGggCCaGUG-CAugCGGGUCGUCg -3'
miRNA:   3'- uGGCCuaGG-CGUaGUugGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 155139 0.66 0.954281
Target:  5'- cGCCGGGUCCcCGaaAACa-GGUCGUCg -3'
miRNA:   3'- -UGGCCUAGGcGUagUUGgcCCAGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.