Results 41 - 60 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8982 | 5' | -55.8 | NC_002512.2 | + | 154320 | 0.69 | 0.871914 |
Target: 5'- gACCgGGAUCCGgaGUCGuCCGcGUCGUCg -3' miRNA: 3'- -UGG-CCUAGGCg-UAGUuGGCcCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 153342 | 0.68 | 0.904929 |
Target: 5'- gGCCGG-UCCGgGUCGGC-GGGUCc-- -3' miRNA: 3'- -UGGCCuAGGCgUAGUUGgCCCAGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 153285 | 0.72 | 0.697435 |
Target: 5'- gGCUGGcUCCGCuggGUCGGuCCGGGUCGg- -3' miRNA: 3'- -UGGCCuAGGCG---UAGUU-GGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 152953 | 0.67 | 0.927374 |
Target: 5'- -gUGGAUCCGCG--AGCgGGGUCcUCu -3' miRNA: 3'- ugGCCUAGGCGUagUUGgCCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 151884 | 0.68 | 0.916602 |
Target: 5'- cGCCGGcgAUCCGCGgaUCGuuuCCGGuaggcaugccGUCGUCg -3' miRNA: 3'- -UGGCC--UAGGCGU--AGUu--GGCC----------CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 145635 | 0.67 | 0.946203 |
Target: 5'- cCCGccuUCCGCGUCGagauGCCGGGcCcgCg -3' miRNA: 3'- uGGCcu-AGGCGUAGU----UGGCCCaGuaG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 142280 | 0.67 | 0.927374 |
Target: 5'- gGCCGGGgaCgGCGUCGACgGGGgauccgacgCGUCc -3' miRNA: 3'- -UGGCCUa-GgCGUAGUUGgCCCa--------GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 141195 | 0.72 | 0.707206 |
Target: 5'- uACCGGAUCaugcaGCAgcgCAGCCGGGgCGg- -3' miRNA: 3'- -UGGCCUAGg----CGUa--GUUGGCCCaGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 140119 | 0.7 | 0.825664 |
Target: 5'- uGCCGGAcgUCCGag--AACUGGGUCAUg -3' miRNA: 3'- -UGGCCU--AGGCguagUUGGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 139246 | 0.67 | 0.932419 |
Target: 5'- gACCGcGG-CCGCGgc-GCCGGGUCGc- -3' miRNA: 3'- -UGGC-CUaGGCGUaguUGGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 139126 | 0.67 | 0.922101 |
Target: 5'- gGCCaaGAagCGCuucUCGGCCGGGUCGUUc -3' miRNA: 3'- -UGGc-CUagGCGu--AGUUGGCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 138323 | 0.66 | 0.964791 |
Target: 5'- -gCGGAUCCGCGagagcggcguggUCAgcGCCaGGUgGUCc -3' miRNA: 3'- ugGCCUAGGCGU------------AGU--UGGcCCAgUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 137349 | 0.71 | 0.791413 |
Target: 5'- cGCCGcGG-CCGCcgCGGCCGGGUagAUCc -3' miRNA: 3'- -UGGC-CUaGGCGuaGUUGGCCCAg-UAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 136168 | 0.66 | 0.964791 |
Target: 5'- cCCGucGAUCCGCcgCGcggcggggucGCCGGGaucgCGUCg -3' miRNA: 3'- uGGC--CUAGGCGuaGU----------UGGCCCa---GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 135849 | 0.69 | 0.84963 |
Target: 5'- cGCCGaagaGAUCCGCcgCGAaaccgagcguCCGGGUCAc- -3' miRNA: 3'- -UGGC----CUAGGCGuaGUU----------GGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 135324 | 0.67 | 0.924237 |
Target: 5'- cCCGaGGUCgGCGUCAGCCGcgccggggugcugcuGGcCGUCg -3' miRNA: 3'- uGGC-CUAGgCGUAGUUGGC---------------CCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 134088 | 0.66 | 0.964791 |
Target: 5'- uAUCGGAUCCGCGUCc-CCGGcGcCu-- -3' miRNA: 3'- -UGGCCUAGGCGUAGuuGGCC-CaGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 132011 | 0.69 | 0.864683 |
Target: 5'- --gGGAUCuCGCGUCGGCgggCGGGUcCGUCu -3' miRNA: 3'- uggCCUAG-GCGUAGUUG---GCCCA-GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 131335 | 0.75 | 0.539298 |
Target: 5'- cGCCGGAUCCGCGgaacGCCGGG-CGa- -3' miRNA: 3'- -UGGCCUAGGCGUagu-UGGCCCaGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 130488 | 0.71 | 0.791413 |
Target: 5'- gGCCcGAUCCGUcgCAGCCGGGcugCGa- -3' miRNA: 3'- -UGGcCUAGGCGuaGUUGGCCCa--GUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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