miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 126979 0.68 0.885761
Target:  5'- --gGGGUCCGCGguccucuccCAGCgCGGGUCGUa -3'
miRNA:   3'- uggCCUAGGCGUa--------GUUG-GCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 124790 0.67 0.927374
Target:  5'- cCCGGGUCCGgGUCcagcugacggAGCCGGGa---- -3'
miRNA:   3'- uGGCCUAGGCgUAG----------UUGGCCCaguag -5'
8982 5' -55.8 NC_002512.2 + 124097 0.66 0.961496
Target:  5'- -aCGGAcgCCGCGcCuuuCCGGGUCAc- -3'
miRNA:   3'- ugGCCUa-GGCGUaGuu-GGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 123648 0.67 0.927374
Target:  5'- cCCGGGUauauaacgCCGCggCGGCCGGGcUCGg- -3'
miRNA:   3'- uGGCCUA--------GGCGuaGUUGGCCC-AGUag -5'
8982 5' -55.8 NC_002512.2 + 122812 0.7 0.825664
Target:  5'- -gCGGGUCCccuacguccagcGCGUCGACCGGGacuucucCGUCg -3'
miRNA:   3'- ugGCCUAGG------------CGUAGUUGGCCCa------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 119594 0.67 0.941833
Target:  5'- cGCUGGAUgugCCGCAgcuggucCAggaaguacuccACCGGGUCGUa -3'
miRNA:   3'- -UGGCCUA---GGCGUa------GU-----------UGGCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 117073 0.72 0.73517
Target:  5'- aACCGGGUggCCGUcaacgccuucaacAcCAAUCGGGUCAUCa -3'
miRNA:   3'- -UGGCCUA--GGCG-------------UaGUUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 113184 0.69 0.860248
Target:  5'- gACCGGcgUCGcCGUCcgcuccgcgagcgggAGCCGGGUCcUCg -3'
miRNA:   3'- -UGGCCuaGGC-GUAG---------------UUGGCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 113154 0.67 0.941833
Target:  5'- cGCCGGccUCGCcgCGGCCGGG-CGg- -3'
miRNA:   3'- -UGGCCuaGGCGuaGUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 113144 0.7 0.825664
Target:  5'- gGCCuGGUCCaucgcCAUCAGCCGGGccaCGUCg -3'
miRNA:   3'- -UGGcCUAGGc----GUAGUUGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 110546 0.7 0.841029
Target:  5'- gACCGGcguuUCCGCccccgcgcgggagGUCcuGCCGGGUCAg- -3'
miRNA:   3'- -UGGCCu---AGGCG-------------UAGu-UGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 110452 0.66 0.964791
Target:  5'- uGCCGGAUCauCAcCAGCaGGGcCGUCa -3'
miRNA:   3'- -UGGCCUAGgcGUaGUUGgCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 109613 0.72 0.745601
Target:  5'- aGCCGGAUcaCCGuCAUCAGCCGGcgGUCc-- -3'
miRNA:   3'- -UGGCCUA--GGC-GUAGUUGGCC--CAGuag -5'
8982 5' -55.8 NC_002512.2 + 109063 0.73 0.677746
Target:  5'- gACCGGAcccgCCGCGUC--CCGGGUCc-- -3'
miRNA:   3'- -UGGCCUa---GGCGUAGuuGGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 108938 0.68 0.910293
Target:  5'- aGCCGGuuaccgCCGCccuugcccgucggGUCGcCCGGGUcCGUCa -3'
miRNA:   3'- -UGGCCua----GGCG-------------UAGUuGGCCCA-GUAG- -5'
8982 5' -55.8 NC_002512.2 + 108470 0.67 0.941833
Target:  5'- cGCCGGGUUCGCGcUgAACgugacGGUCGUCa -3'
miRNA:   3'- -UGGCCUAGGCGU-AgUUGgc---CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 107209 0.67 0.941833
Target:  5'- aGCCGGG-CCGCGgccggggAGCCGcGGUCAccgUCg -3'
miRNA:   3'- -UGGCCUaGGCGUag-----UUGGC-CCAGU---AG- -5'
8982 5' -55.8 NC_002512.2 + 104971 0.73 0.651948
Target:  5'- cGCCGGGUCCGCcUCGAgguaggggagguagcCCGGGUuccgcacgggcgCGUCg -3'
miRNA:   3'- -UGGCCUAGGCGuAGUU---------------GGCCCA------------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 104791 0.67 0.937239
Target:  5'- gGCgGGGUCCGCGcgCGG-CGGGUUGUa -3'
miRNA:   3'- -UGgCCUAGGCGUa-GUUgGCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 103456 0.67 0.927374
Target:  5'- aGCgCGGGUCCGaggacgCGGCuCGGGUC-UCg -3'
miRNA:   3'- -UG-GCCUAGGCgua---GUUG-GCCCAGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.