miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 103360 0.71 0.773439
Target:  5'- uCCGGggCCGCGg---UCGGGUCGUCc -3'
miRNA:   3'- uGGCCuaGGCGUaguuGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 102347 0.66 0.950352
Target:  5'- aGCCGGGUCCggGCGUCggUCGuccGGagGUCc -3'
miRNA:   3'- -UGGCCUAGG--CGUAGuuGGC---CCagUAG- -5'
8982 5' -55.8 NC_002512.2 + 102152 0.72 0.736123
Target:  5'- gGCCGcGA-CCGCG---GCUGGGUCGUCg -3'
miRNA:   3'- -UGGC-CUaGGCGUaguUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 99116 0.66 0.954281
Target:  5'- gGCCGcuccaagaGAUCgCGCA-CGGCCGGaUCGUCg -3'
miRNA:   3'- -UGGC--------CUAG-GCGUaGUUGGCCcAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 98553 0.66 0.966051
Target:  5'- cCCGGcguUCCGCGgaucCGGCgggcgccucgggcggCGGGUCGUCc -3'
miRNA:   3'- uGGCCu--AGGCGUa---GUUG---------------GCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 95836 0.67 0.946203
Target:  5'- cACCGGAcgCGCAgguugaaCAugGCCGGGUgGUCc -3'
miRNA:   3'- -UGGCCUagGCGUa------GU--UGGCCCAgUAG- -5'
8982 5' -55.8 NC_002512.2 + 95725 0.71 0.791413
Target:  5'- cGCCaGGGUCCGgGUCGAcggguacccguCCGGGUUgAUCg -3'
miRNA:   3'- -UGG-CCUAGGCgUAGUU-----------GGCCCAG-UAG- -5'
8982 5' -55.8 NC_002512.2 + 95134 0.67 0.932419
Target:  5'- aACCGGAcggUCCGCccCGG-CGGGUCGa- -3'
miRNA:   3'- -UGGCCU---AGGCGuaGUUgGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 91980 0.68 0.892368
Target:  5'- uCCGGAgggCCGCGU---CCGGGUC-UCc -3'
miRNA:   3'- uGGCCUa--GGCGUAguuGGCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 91182 0.66 0.961496
Target:  5'- uGCgGGAUCCGgGUCAGggagaccgccacCCGGGgcaCGUUc -3'
miRNA:   3'- -UGgCCUAGGCgUAGUU------------GGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 88494 0.68 0.904929
Target:  5'- -gUGGAUCCGCAgccgcuCCGGGUgCAUg -3'
miRNA:   3'- ugGCCUAGGCGUaguu--GGCCCA-GUAg -5'
8982 5' -55.8 NC_002512.2 + 87797 0.74 0.587291
Target:  5'- uACCGGGUCCGCGUucgguugcaccccCAgcgaucccccgGCCGGG-CGUCg -3'
miRNA:   3'- -UGGCCUAGGCGUA-------------GU-----------UGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 85192 0.75 0.568555
Target:  5'- -aCGGGUCCcCGUgGgucGCCGGGUCGUCg -3'
miRNA:   3'- ugGCCUAGGcGUAgU---UGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 83817 0.67 0.922101
Target:  5'- cGCCGGcggCgGCGgcucCGGgcCCGGGUCGUCg -3'
miRNA:   3'- -UGGCCua-GgCGUa---GUU--GGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 83102 0.82 0.241837
Target:  5'- uCCGGGUCCggcgguccgGCGUCggUCGGGUCGUCg -3'
miRNA:   3'- uGGCCUAGG---------CGUAGuuGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 82095 0.67 0.946628
Target:  5'- cCCGGAUCCGgAUCAuggucuugaggcacuCCaGGUCcUCg -3'
miRNA:   3'- uGGCCUAGGCgUAGUu--------------GGcCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 80638 0.73 0.657915
Target:  5'- uCCGGccGUCCGCGgcggCGgcGCCGGGUcCGUCg -3'
miRNA:   3'- uGGCC--UAGGCGUa---GU--UGGCCCA-GUAG- -5'
8982 5' -55.8 NC_002512.2 + 78076 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 77998 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 77997 0.67 0.937239
Target:  5'- uACCGGAaacgaUCCGCGgaucGCCGGcgcccacgaGUCAUCc -3'
miRNA:   3'- -UGGCCU-----AGGCGUagu-UGGCC---------CAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.