miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 77920 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 77122 0.66 0.954281
Target:  5'- cGCgGGGUCCGauccuuuUCGACCGGGcUCc-- -3'
miRNA:   3'- -UGgCCUAGGCgu-----AGUUGGCCC-AGuag -5'
8982 5' -55.8 NC_002512.2 + 76626 0.66 0.954281
Target:  5'- gACCaGGAcccgCCGCAUCGcAUCGGGUUu-- -3'
miRNA:   3'- -UGG-CCUa---GGCGUAGU-UGGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 73973 0.67 0.922101
Target:  5'- aGCUGGAggaCGCGUCGgcGCCGGacUCGUCc -3'
miRNA:   3'- -UGGCCUag-GCGUAGU--UGGCCc-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 72850 0.66 0.957995
Target:  5'- uGCCGGGUCCucGCu----CCGGGccgCGUCg -3'
miRNA:   3'- -UGGCCUAGG--CGuaguuGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 67761 0.69 0.857253
Target:  5'- aGCCGGggUCGUcUCcggcGCCgGGGUCGUCg -3'
miRNA:   3'- -UGGCCuaGGCGuAGu---UGG-CCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 60740 0.66 0.961496
Target:  5'- aACCGcGA-CCGCggCGGCCGGG-CGg- -3'
miRNA:   3'- -UGGC-CUaGGCGuaGUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 57009 0.7 0.820685
Target:  5'- gGCCGGGUCgGCgGUCuGACCGGGgggagcggaggccgCGUCc -3'
miRNA:   3'- -UGGCCUAGgCG-UAG-UUGGCCCa-------------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 54511 0.67 0.932419
Target:  5'- gGCCGuGAUgCCG-AUCgAACCGGGaCAUCc -3'
miRNA:   3'- -UGGC-CUA-GGCgUAG-UUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 53259 0.67 0.927374
Target:  5'- cACCGGAUCCGagccccCGACgGGGUgGa- -3'
miRNA:   3'- -UGGCCUAGGCgua---GUUGgCCCAgUag -5'
8982 5' -55.8 NC_002512.2 + 52812 0.7 0.8002
Target:  5'- aACCGGucGUCauuCAUCAACCGaGGUCGUUu -3'
miRNA:   3'- -UGGCC--UAGgc-GUAGUUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 49195 0.66 0.957995
Target:  5'- -gCGGAUCCaGUA-CAACCGGGcggCGUg -3'
miRNA:   3'- ugGCCUAGG-CGUaGUUGGCCCa--GUAg -5'
8982 5' -55.8 NC_002512.2 + 45523 0.67 0.932419
Target:  5'- gACgGGA-CCGCAaucCGAUCGGGgCGUCg -3'
miRNA:   3'- -UGgCCUaGGCGUa--GUUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 43642 0.69 0.857253
Target:  5'- gGCUGGAUCCGCuguUCca-CGGGUCc-- -3'
miRNA:   3'- -UGGCCUAGGCGu--AGuugGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 42242 0.66 0.964791
Target:  5'- uGCCGGAuauuaccgaUCCGCGgaCGGCCGaaagagggcgauGGUUAUCc -3'
miRNA:   3'- -UGGCCU---------AGGCGUa-GUUGGC------------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 36381 0.66 0.957995
Target:  5'- cACCGuGAcgUUgGCG-CGACCGaGGUCGUCc -3'
miRNA:   3'- -UGGC-CU--AGgCGUaGUUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 35044 0.68 0.898758
Target:  5'- uCgGGGUCCGCAcgGGCCGGGaCAg- -3'
miRNA:   3'- uGgCCUAGGCGUagUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 34957 0.67 0.932419
Target:  5'- -gCGGAgCgGCcgCGACCGGGUCc-- -3'
miRNA:   3'- ugGCCUaGgCGuaGUUGGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 32567 0.72 0.736123
Target:  5'- cGCCGGGcgCCGCGgguGCCGgGGUCGUg -3'
miRNA:   3'- -UGGCCUa-GGCGUaguUGGC-CCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 25140 0.66 0.964791
Target:  5'- gGCCGGGaUCGCugagCAcCCGGGUCc-- -3'
miRNA:   3'- -UGGCCUaGGCGua--GUuGGCCCAGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.